Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed11g1472 ATGAGTTGCAACGGGTGCCGTGTACTTCGAAAGGGTTGCAGTGAGTCTTGTATCCTGCGGCCGTGTCTACAGTGGATCGACACGCCCGAAGCACAAGGCCATGCCACTGTCTTCGTAGCCAAATTCTTCGGCCGTGCCGACCTCATGTCCTTCATTTCCAACGTTCCCGAACACCAAAGGCCTGCTCTGTTTCAGTCTCTGCTGTTTGAAGCGTGTGGTAGAACAGTGAACCCTGTCAACGGTGCTGTTGGCCTTTTATGGACCGGAAACTGGCACGTGTGCCAGACTGCGGTTGAGACGGTGCTCCGCGGCGGAACCGTCAGGCCCATGCCGGAGCTTCTCGGCCTTGACGCTCCCACCGCCGACGACGCCTCCGAAGGAGAAGTTGCCTGTACCGACAAGTGGAGGGTCCGAGATCCCAACCCGAATTTCCGGTTCCCAGGTTCGAGGTCCGATAAGGCCGGCTCCGGCGGCAAACGCAAGCGATTCGAAGAACTCGCCAAGCTCCAGACGACGACCACCGATCTTAATCTCCGGCTGACGCCGAGTTTTCTGCAGAACACGGCGAGCTACGGGTGCCGGCAGGAAATTCGCTGGCCGGGGTCACCGTCGATGAACTCCGAGGAGTCCGGGACAACGACGGCGTGCTTGGAGAGCGGGGTCGGAGGTCACTACGCTCCCGACGGAGACCGGAAAGTGCTAAACCTTTTCATTTGA 717 0.5914 MSCNGCRVLRKGCSESCILRPCLQWIDTPEAQGHATVFVAKFFGRADLMSFISNVPEHQRPALFQSLLFEACGRTVNPVNGAVGLLWTGNWHVCQTAVETVLRGGTVRPMPELLGLDAPTADDASEGEVACTDKWRVRDPNPNFRFPGSRSDKAGSGGKRKRFEELAKLQTTTTDLNLRLTPSFLQNTASYGCRQEIRWPGSPSMNSEESGTTTACLESGVGGHYAPDGDRKVLNLFI 238
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed11g1472 238 Pfam Lateral organ boundaries (LOB) domain 2 101 IPR004883 -
Aed11g1472 238 ProSiteProfiles LOB domain profile. 1 107 IPR004883 -
Aed11g1472 238 PANTHER LOB DOMAIN-CONTAINING PROTEIN 38 1 238 - -
Aed11g1472 238 PANTHER LOB DOMAIN-CONTAINING PROTEIN 1 238 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed11g1472 Aed-Chr11 19136860 19138395 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed11g1472 1 237 AS2 family AT3G49940 54.440 1.32e-81 243
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Aed11g1472 LOB 2.1e-26 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed6g0727 6 6412785 6415096 Aed11g1472 11 19136860 19138395 PCT