Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed11g1467 ATGATAAGAGATACTGTATGCGCACAAATCATCAAGCTATTAATACTACTGCTCCGCTACTCGCTGTTGCTGCATAGGCTAGTGCGCACCCCTGTCTTCAACCTCTTACCGTGCGTATCTCTCAATCCATCAAAACTAACAACAACAACAGCAGCAGCAGCAGCAGCTTCGCCACCGTTGCACCGCACCGAAACCAATCACCACAAACTTGGGATCTCAGATTCGACGCGCCAAACCATGTCGAAGGCGCGTGTCTACACCGATGTCAATGTTCTTCGCCCCAAGGAGTATTGGGATTACGAGTCTCTCACCCTTCAATGGGGGTATGATCAAGATGATTATGAGGTTGTACGAAAAGTGGGCAGGGGGAAATATAGTGAAGTTTTTGAAGGCATAAATGTTAATAGCAATGAGCGCTGTATAATCAAGATTCTGAAACCTGTCAAGAAAAAAAAGATTAAAAGAGAGATAAAAATACTTCAGAATATTTGTGGAGGCCCAAATATTGTCAAGCTTCATGATATTGTCAGAGATCAACATTCGAAAACTCCCAGTTTGATATTTGAGTATGTCAACAGTACAGATTTTAAAGTTTTGTATCCAACCTTGACTGATTATGACATACGCTATTACATATATGAGCTCCTTAAGGCCTTGGATTACTGCCATTCTCAAGGCATTATGCATAGGGATGTCAAGCCTCATAATGTTATGATAGATCATGAGTTACGAAAACTTCGCTTGATAGATTGGGGTCTTGCTGAATTTTATCATCCTGGAAAGGAATATAATGTTCGTGTGGCTTCAAGATACTTTAAGGGGCCTGAACTTCTAGTTGATTTGCAAGACTATGACTACTCATTGGACATGTGGAGCCTTGGCTGCATGTTTGCTGGAATGATATTTCGCAAAGAACCTTTCTTTTATGGTCATGACAACCATGATCAGCTTGTCAAAATAGCCAAGGTAACATTTATAAAATGTTTGGTTATCTTGCTGTCACTACACAGTCGAAAACCCTGGTCTAAATTTATCAATCCAGATAATCAGCATCTTGTGTCTCCTGAGGCAATTGATTTTCTTGATAAGCTCCTTCGATATGATCACCAGGACAGGCTAACAGCTAGAGAAGCAATGGCACATCCATATTTCTCTCAGGTAAGGGCAGCAGAAAGTAGCAGAACGAGGACACAGTAA 1197 0.4119 MIRDTVCAQIIKLLILLLRYSLLLHRLVRTPVFNLLPCVSLNPSKLTTTTAAAAAASPPLHRTETNHHKLGISDSTRQTMSKARVYTDVNVLRPKEYWDYESLTLQWGYDQDDYEVVRKVGRGKYSEVFEGINVNSNERCIIKILKPVKKKKIKREIKILQNICGGPNIVKLHDIVRDQHSKTPSLIFEYVNSTDFKVLYPTLTDYDIRYYIYELLKALDYCHSQGIMHRDVKPHNVMIDHELRKLRLIDWGLAEFYHPGKEYNVRVASRYFKGPELLVDLQDYDYSLDMWSLGCMFAGMIFRKEPFFYGHDNHDQLVKIAKVTFIKCLVILLSLHSRKPWSKFINPDNQHLVSPEAIDFLDKLLRYDHQDRLTAREAMAHPYFSQVRAAESSRTRTQ 398
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed11g1467 398 ProSiteProfiles Protein kinase domain profile. 114 384 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aed11g1467 398 Gene3D Phosphorylase Kinase; domain 1 114 190 - -
Aed11g1467 398 ProSitePatterns Serine/Threonine protein kinases active-site signature. 227 239 IPR008271 GO:0004672|GO:0006468
Aed11g1467 398 Gene3D Transferase(Phosphotransferase) domain 1 191 384 - -
Aed11g1467 398 ProSitePatterns Protein kinases ATP-binding region signature. 120 143 IPR017441 GO:0005524
Aed11g1467 398 PANTHER CASEIN KINASE II SUBUNIT ALPHA-3 39 398 - -
Aed11g1467 398 SMART serkin_6 114 384 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aed11g1467 398 CDD STKc_CK2_alpha 94 384 IPR045216 GO:0004674|GO:0006468
Aed11g1467 398 SUPERFAMILY Protein kinase-like (PK-like) 95 388 IPR011009 -
Aed11g1467 398 PANTHER CASEIN KINASE II SUBUNIT ALPHA 39 398 IPR045216 GO:0004674|GO:0006468
Aed11g1467 398 Pfam Protein kinase domain 114 384 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed11g1467 Aed-Chr11 19101239 19106101 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed11g1467 112 387 Core Cell Cycle Gene Families AT3G48750 32.313 3.05e-40 143
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CK2 Aed11g1467 Pkinase 8.9e-65 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed11g1467 K03097 - gmx:100819679 602.438
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed11g1467 11 19101239 19106101 Aed6g0735 6 6498596 6504135 PCT