Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed11g1461 ATGGTTTCTCTCGCCGGTGCCGGGTACAGCACAGTCGTCGGAATCAATAATCGGAGGCCAAAATTATTCATAACAATTATACCAAACAGCACCATTTCAACGCTCTACGTCGTCGCATCTCTGTGTCGGTGCTGCAGAGAACATGCCTTCAGTAGCGCTTCCGAATCAGCTTGGACAGATTTTCCGGTAGAGAACGCGTACGAGGTATTAGGGGTGTCGGAGGCCAGCTCTTTTGACGAGATTAAAGCGTCGTTTCGCAAATTGGCCAAAGAAACTCACCCGGACCTCGCTGAGTCAAGGAACGATGCCTCTGCGTCTCGACGTTTTGTACAAATCCTGGCTGCTTACGAGATTCTTTCAGATTCTCAAAGGAGAGGCCATTATGACATGTACCTGCTGTCTCAGAAAAAGCTTATGCAACAACATTCTGGACAGGGTTCAAAATTGCGTATTTACAAATCACAGGCTACTATATTCAAGGAGATGGAAGTTGTTGAATGGTTAAAATGGTACAGATTAACTATAAATAATATTTTGTCAGAAAAGAAGGTGGTAGTTGGAACAGGCTATTTTGATGTACTTGAGAGAGATTTTTATTCAGCTATTCATGCGGCATACTATGGTCCTGAAATTGATTCCATGGAGCTTCTTCCTGATTGCTTTGAGGCTGAGGAGAGGTCCTCTTATGAAACTCTCGAGGTTTTGCACTTAGTTTCAGGACGTGATCTTTTTGGGATGGTTTGCCTAGCAACCAAGGTTCCAGAGATATCGGTTACTAACAATGAGAAGTTAACTTCTTTTAGTTCCTTCCATTCAGGCCTGTGTCAATCTATAACAGATTTGAACGTCCACAGGAATGCAGAAAGATCACATGATTTTGAAACTCATCACGGTCACAGCTCTAAAACTTCAAGTATTGTATCAGATGCATATAGACATCTAGAATTGCACATATCTGGAAGAGTGGTTGCTACAGCATCTAGGGCCCTATCTAGATGTTGTTCTGATGAGATGCACACAGAAGATACTGAAGATCACATTCATGTGTTCCTTAATTTATATGAAGATCCCAAACATATCAGCAGTGATTTTTGGAAAGATTACCTTGCAAATGGTGCTGTTGGAAGAAGAATTTATTTGGGAACCATATCTGGACTTGGGAGCAGTCCAGATGAAGGTTGTTGTTATGTCTACAATGACAAGGGTACAGAGACCCATGTGATTATGAAGCATAGAACATTGATGGTGAAGCATATGCACTGGTATGAAGTGGGTGAGAAAGTTTCAGTTTGTGAATGTCGATGCACTAGAGCACGTTTACCCCCAAGCAAATTTTGGCTATTTGAGCCTCGTTGTGGCTTCCATGACATAGGGGGTTGGTATGTTGAAACATATGGCAAAGATAAGAATGGTCGTACAGTGCCATCACAAAGGTTCTGGGATGGCTTGGACTATAGAGAGCAAGCTAACAGAAGACTTCATCCAGCAATGTATCTGTTTGCTCTTGCATATCGAACACTTGATCTTGAATATGCCCAAGCAAGCAAGAAATCATTTAGGAATGTTTTTGGAACACAAATGTTCCGAATTCTTCATTGGTGCAAGAAACTTGTTCAATAG 1620 0.4191 MVSLAGAGYSTVVGINNRRPKLFITIIPNSTISTLYVVASLCRCCREHAFSSASESAWTDFPVENAYEVLGVSEASSFDEIKASFRKLAKETHPDLAESRNDASASRRFVQILAAYEILSDSQRRGHYDMYLLSQKKLMQQHSGQGSKLRIYKSQATIFKEMEVVEWLKWYRLTINNILSEKKVVVGTGYFDVLERDFYSAIHAAYYGPEIDSMELLPDCFEAEERSSYETLEVLHLVSGRDLFGMVCLATKVPEISVTNNEKLTSFSSFHSGLCQSITDLNVHRNAERSHDFETHHGHSSKTSSIVSDAYRHLELHISGRVVATASRALSRCCSDEMHTEDTEDHIHVFLNLYEDPKHISSDFWKDYLANGAVGRRIYLGTISGLGSSPDEGCCYVYNDKGTETHVIMKHRTLMVKHMHWYEVGEKVSVCECRCTRARLPPSKFWLFEPRCGFHDIGGWYVETYGKDKNGRTVPSQRFWDGLDYREQANRRLHPAMYLFALAYRTLDLEYAQASKKSFRNVFGTQMFRILHWCKKLVQ 539
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed11g1461 539 CDD DnaJ 65 121 IPR001623 -
Aed11g1461 539 PRINTS DnaJ domain signature 67 85 IPR001623 -
Aed11g1461 539 PRINTS DnaJ domain signature 104 124 IPR001623 -
Aed11g1461 539 PRINTS DnaJ domain signature 85 100 IPR001623 -
Aed11g1461 539 ProSitePatterns Nt-dnaJ domain signature. 109 128 IPR018253 -
Aed11g1461 539 Gene3D DnaJ domain 56 152 IPR036869 -
Aed11g1461 539 ProSiteProfiles dnaJ domain profile. 65 132 IPR001623 -
Aed11g1461 539 SMART dnaj_3 64 124 IPR001623 -
Aed11g1461 539 Pfam DnaJ domain 65 129 IPR001623 -
Aed11g1461 539 SUPERFAMILY Chaperone J-domain 63 142 IPR036869 -
Aed11g1461 539 PANTHER CHAPERONE DNAJ-DOMAIN SUPERFAMILY PROTEIN 43 538 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed11g1461 Aed-Chr11 19071680 19075951 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed11g1461 67 129 C2H2 Transcription Factor Family AT1G74250 46.970 5.09e-10 60.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed11g1461 - - gmx:100805332 1032.71