Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed11g1444 ATGAACACAGGCGTTACCACCAGAAAAGACATGGACCGGATCAAAGGCCCATGGAGCCCGGAGGAGGACGATGCTCTGCAGAAGCTTGTCGAGAAACACGGGCCCAGGAACTGGTCCCTGATCAGCAAGTCAATCCCGGGCCGCTCCGGGAAGTCCTGCAGGCTCCGGTGGTGCAACCAGCTGTGCCCTCAGGTGGAGCACCGGGCCTTCAGCCCCGAAGAGGACGACACCATAATCAGGGCCCATGCCCGCTTTGGCAACAAGTGGGCCACCATAGCTCGCCTCCTCCACGGTCGAACCGACAACGCAATCAAAAACCACTGGAACTCAACGTTGAAGCGCAAGTGCCCTTCAACCATGATCGACGACAACACTCCGCCGCTCAAGAGATCCGTGAGTGCCGGCGCGGCGATTCCAGTCTCCACGGGACTCTACATGAACCCTCCCACACCGGGTAGCCCCACCGGATCCGATGTGAGCGAGTCCAGCGTACCAGTTGCGTCCTCCTCGCACGTGTTCAGACCCGTGCCTAGGACTGGCGCGGTTCTACCGCCCGTAGAAACGACGTCGTCCTCCAATGACCCTCCAACTTCGCTATCTCTATCACTCCCTGGCGTAGACTCTTCCGAAGTTTCCAATCGGATAACTGAGCCAATACACGCCGCGCCACATCCGTCAAATGTTATTCCTCTGCTGCCAATGATGACGGCTCCGGTTCCAGCGCCCGCGCCTTTTAATTTTAGCAAAGAGTTTCTGGCTGTGATGCAGGAAATGATAAGGAAGGAGGTGAGGAGCTATATGGAGATCCAGGATCAGAATGGGATGTGTTTTCAGGTAGCAGTGAATGAAGGGTTTAGGAAGCGTATTGGAATTAGCAGGGTTGATTCGTAA 891 0.5634 MNTGVTTRKDMDRIKGPWSPEEDDALQKLVEKHGPRNWSLISKSIPGRSGKSCRLRWCNQLCPQVEHRAFSPEEDDTIIRAHARFGNKWATIARLLHGRTDNAIKNHWNSTLKRKCPSTMIDDNTPPLKRSVSAGAAIPVSTGLYMNPPTPGSPTGSDVSESSVPVASSSHVFRPVPRTGAVLPPVETTSSSNDPPTSLSLSLPGVDSSEVSNRITEPIHAAPHPSNVIPLLPMMTAPVPAPAPFNFSKEFLAVMQEMIRKEVRSYMEIQDQNGMCFQVAVNEGFRKRIGISRVDS 296
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed11g1444 296 CDD SANT 69 112 IPR001005 -
Aed11g1444 296 SMART sant 14 63 IPR001005 -
Aed11g1444 296 SMART sant 66 114 IPR001005 -
Aed11g1444 296 MobiDBLite consensus disorder prediction 1 20 - -
Aed11g1444 296 MobiDBLite consensus disorder prediction 184 209 - -
Aed11g1444 296 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Aed11g1444 296 MobiDBLite consensus disorder prediction 142 209 - -
Aed11g1444 296 Gene3D - 68 132 - -
Aed11g1444 296 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 67 116 IPR017930 -
Aed11g1444 296 MobiDBLite consensus disorder prediction 146 169 - -
Aed11g1444 296 PANTHER TRANSCRIPTION FACTOR MYB73 9 267 - -
Aed11g1444 296 SUPERFAMILY Homeodomain-like 12 108 IPR009057 -
Aed11g1444 296 ProSiteProfiles Myb-like domain profile. 10 61 IPR001005 -
Aed11g1444 296 CDD SANT 17 59 IPR001005 -
Aed11g1444 296 Gene3D - 14 66 - -
Aed11g1444 296 PANTHER MYB PROTEIN-RELATED 9 267 - -
Aed11g1444 296 Pfam Myb-like DNA-binding domain 18 76 - -
Aed11g1444 296 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 10 65 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed11g1444 Aed-Chr11 18951298 18952188 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed11g1444 7 295 MYB Transcription Factor Family AT4G37260 53.012 5.19e-102 299
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Aed11g1444 Myb_DNA-bind_6 8.2e-18 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed11g1444 K09422 - gmx:780556 493.426
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed6g0770 6 6839374 6840261 Aed11g1444 11 18951298 18952188 PCT