Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed11g1439 ATGCCGACGTTTTTTCACTGTTTTAATTCAGCTCATGTTCTAATCCAAACTGCATTTGGGCGAGTCATGGAACCAGCTTCAGCTGATTCTCCATCTCAACCCACTCCTCCAGTTTCTAATACTGAAGAACATCACTCAACCAAAGTATCTGCACAAATTGGCAATGCAGCCGATTCACCACCGTCAGTGTCACCTGCTTCTGCTGGCATATCATCCTGGGCAAGAAAAATTAAACTCCCACAGGCCCTTGGGCTTGGAGGAGCACAACAGAACTCGCAGTCCGAAAGCACTGGCATGTCAGCTTTTGCTCGCCTAACTGGTGGGCTTGGATTGCTAAAGCCATCAAATGAAACTGCTCCAGTCAATTCAGGAGCCGAGCAATCTAACTTGATTGAATCTGTCACCAAAGGGTTGGTGGACTCTTCCAAGAGTGCAGTAAAGGCGGTGCAGGTCAAAGCACGCCATATTGTCTCTCAAAATAAACGTAGATACCAGGAAGGTGGATTTGATTTGGATATGACATACATCACTGAAAATATAATTGCTATGGGATTTCCGGGTGGTGATTTTAGCTCTGGAATTTTTGGATACATTGAGGGAAAGTACAAAGTATACAATCTTTGTTCAGAAAGGTTATATGACGGATCATTATTCCAGGGGAAGTCTACTGGACGCAGCACTTGTCCTTTATATTCAGTGCACTTGTTCTTTATGTTCAACTTAAAGTTGAAAATTGGAGTCAACTTGCCAGGAGTTGATGATTTGCAATATATGGAAGGACAGTACCTTGCATATCCTCATCACAAGCATTCAGAAAATCCTATTGAAAAATTTTCCAGTGTCACTCCCCAAGGAACTCTAACAATATTTTATAGTGTTGCAAGTTTCCCATTTAGTGATCATAATTGCCCTCCTATCCAACTTATAGCATCATTTTGTCAAAGTGCATATTCATGGTTGAAGGAGGATATTCAAAATGTGGTGGTTGTTCATTGTAAAGCTGGTATGGGGAGGACTGGACTGATGATATGTAGTCTTCTTTTGTTTCTTAAGGCAAGTCATGATAATCAACTTCAAAGACTTTGGAACTTCTTCCCAACTGCAGAGGAAGCTATTGATTACTTTAACCATAAAAGATGTGTAGATGGAAAGGCTCTAGTCCTGCCTAGTCAGATTCCAGAAGATTTCTGGATCACTGCACCAAAGAAGAAAGGAATTGTGGTTTTTGCACTACCAGGAGAGCCTGGTCTAACAGAGTTGGTAGGAGACTTCAAAATTCATTTTCAAGATCGACAGGGAGATTTCTACTGTTGGATGAATACAACAATGACAGAAAACCGAAAATTTTTGGATGGTTCAGATTTTGATGATTTCGACAAGAGAAAGATCCCCGCTCCAGGATTCAAGGTGGAAGTTGTGATGATAGACTACAATGCCACCCTACCTGCCAGCAAAGGATCTGATGGAAACACAAGCAATGCCCTGCCTGGTCCAAAGCCTACTACATCTAATTTAAGTGAGAGTAAAGTCCCTAAAAATGGAGATGATGATGTATTCTCAGACAGTGATGAAGAGGAGTCCCAGGATACACAAAGCAAGAAAGCCGCAACTGAGGCAACAACAGACCATGTAGGGATGTTGACACACACAACGGATCAGTTGTCACTACAGCATGAGGAACGCAAGCAAAATGATGGTTCTGAAGAATCAACTACAGATAAACTTCATAAAAATCATGCAGGCAATAACAACAGCGCAAACATGGGATCTGTTGGGGCAAGTGACATCAAGGCAATTGCAGCGGATGCTTCAGTTTTTTCCTTTGGAGATGAAGATTTTGAAAGTGATTGA 1851 0.4176 MPTFFHCFNSAHVLIQTAFGRVMEPASADSPSQPTPPVSNTEEHHSTKVSAQIGNAADSPPSVSPASAGISSWARKIKLPQALGLGGAQQNSQSESTGMSAFARLTGGLGLLKPSNETAPVNSGAEQSNLIESVTKGLVDSSKSAVKAVQVKARHIVSQNKRRYQEGGFDLDMTYITENIIAMGFPGGDFSSGIFGYIEGKYKVYNLCSERLYDGSLFQGKSTGRSTCPLYSVHLFFMFNLKLKIGVNLPGVDDLQYMEGQYLAYPHHKHSENPIEKFSSVTPQGTLTIFYSVASFPFSDHNCPPIQLIASFCQSAYSWLKEDIQNVVVVHCKAGMGRTGLMICSLLLFLKASHDNQLQRLWNFFPTAEEAIDYFNHKRCVDGKALVLPSQIPEDFWITAPKKKGIVVFALPGEPGLTELVGDFKIHFQDRQGDFYCWMNTTMTENRKFLDGSDFDDFDKRKIPAPGFKVEVVMIDYNATLPASKGSDGNTSNALPGPKPTTSNLSESKVPKNGDDDVFSDSDEEESQDTQSKKAATEATTDHVGMLTHTTDQLSLQHEERKQNDGSEESTTDKLHKNHAGNNNSANMGSVGASDIKAIAADASVFSFGDEDFESD 616
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed11g1439 616 PANTHER PHOSPHATIDYLINOSITOL 3,4,5-TRISPHOSPHATE 3-PHOSPHATASE AND PROTEIN-TYROSINE-PHOSPHATASE PTEN2B 199 222 - -
Aed11g1439 616 PANTHER PHOSPHATIDYLINOSITOL 3,4,5-TRISPHOSPHATE 3-PHOSPHATASE AND PROTEIN-TYROSINE-PHOSPHATASE PTEN2B 293 392 - -
Aed11g1439 616 PANTHER PHOSPHATIDYLINOSITOL 3,4,5-TRISPHOSPHATE 3-PHOSPHATASE AND PROTEIN-TYROSINE-PHOSPHATASE PTEN2B 392 616 - -
Aed11g1439 616 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 163 385 IPR029021 -
Aed11g1439 616 MobiDBLite consensus disorder prediction 481 590 - -
Aed11g1439 616 MobiDBLite consensus disorder prediction 24 48 - -
Aed11g1439 616 PANTHER PHOSPHATASE WITH HOMOLOGY TO TENSIN 293 392 - -
Aed11g1439 616 PANTHER PHOSPHATASE WITH HOMOLOGY TO TENSIN 33 198 - -
Aed11g1439 616 MobiDBLite consensus disorder prediction 554 576 - -
Aed11g1439 616 ProSiteProfiles C2 tensin-type domain profile. 314 477 IPR014020 -
Aed11g1439 616 Pfam Protein-tyrosine phosphatase 300 359 IPR000242 GO:0004725|GO:0006470
Aed11g1439 616 SMART PTEN_C2_2 343 476 IPR014020 -
Aed11g1439 616 PANTHER PHOSPHATASE WITH HOMOLOGY TO TENSIN 392 616 - -
Aed11g1439 616 MobiDBLite consensus disorder prediction 533 553 - -
Aed11g1439 616 MobiDBLite consensus disorder prediction 33 48 - -
Aed11g1439 616 ProSiteProfiles Phosphatase tensin-type domain profile. 162 405 IPR029023 -
Aed11g1439 616 PANTHER PHOSPHATASE WITH HOMOLOGY TO TENSIN 199 222 - -
Aed11g1439 616 PANTHER PHOSPHATIDYLINOSITOL 3,4,5-TRISPHOSPHATE 3-PHOSPHATASE AND PROTEIN-TYROSINE-PHOSPHATASE PTEN2B 33 198 - -
Aed11g1439 616 ProSitePatterns Tyrosine specific protein phosphatases active site. 330 340 IPR016130 GO:0016311|GO:0016791
Aed11g1439 616 MobiDBLite consensus disorder prediction 483 509 - -
Aed11g1439 616 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 328 379 IPR000387 GO:0016311|GO:0016791
Aed11g1439 616 Gene3D Protein tyrosine phosphatase superfamily 147 394 IPR029021 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed11g1439 Aed-Chr11 18914897 18921567 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed11g1439 27 616 Protein tyrosine phosphatase (PTP) family AT3G19420 41.703 2.99e-148 440
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed11g1439 K01110 - gmx:100807702 463.381