Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed11g1428 ATGTGGGATCTGAATGACTCCCCTGATCAGAGAAAGAACTACGAATCTGAAGGTTGCTCTTCTTCGCTGAATGATGATAAAGGCAAGAGAGTGGGATCTGTTTCCAATTCAAGCTCCTCTGCGGTTCTAGTAGAAGATGGATCGGAAGAAGAAGACAGTGAAAGAGGTGCTGGAACCAGAACAACATTGGACAACAAAACCAGCAAAATATTCGGCTTCTCGGTAGCTCATGATGACACTGACCAACCACCCGTCACTCATCAGTTTTTTCCGGTTGAGTACTCCGAACTGCCCCTCACCGCCGCCGTCGCAGGCGGTGGCGGTGGCGGTGGCGGAAGCTTCTTCCCACGGGCTCACTGGGTAGGCGTCAAATTTGGTGAATCGGAAACACCCGGCCCCGGAAAAGCAGTAAAAGTGTCGGAGCCGATGAAGAAAAGTCGCCGAGGACCACGCTCGCGTAGCTCACAGTATCGAGGAGTTACTTTCTACAGAAGAACCGGTAGATGGGAATCTCATATATGGGATTGTGGAAAGCAAGTTTATTTGGGTGGATTTGACACAGCACATGCAGCTGCTCGTGCTTATGATAGAGCGGCCATTAAGTTCCGCGGGGTGGAGGCAGATATCAATTTCAACATCGAAGATTATGAGGAAGACTTGAAGCAGATGAGCAATTTAACCAAGGAGGAGTTTGTGCACGTACTTCGCCGACAAAGCACTGGATTTCCTAGAGGAAGCTCCAAATATAGAGGTGTAACTTTGCACAAGTGTGGAAGATGGGAGGCTCGAATGGGCCAATTTTTGGGCAAAAAGTACGTTTACCTGGGTTTGTTTGACACCGAGGTTGAAGCTGCAAGGGCATATGACAAAGCAGCAATAAAATGCAATGGCAAAGAGGCCGTCACTAATTTTGATCCCAGCATCTATAGTGAGCTTAATTCTGAATCCTCAGGTGTAGCTGCAGATCACAATTTGGATTTGAGTCTGGGCAATTCGAGCTCTAAACATAGCAGCAATAGCCAAACATCGGGGAATCAGTTCCCAAATTCTGCAACCGATCAGCACATGCCACCCGAATCCAATTGGCGGAATGGGGGAAGCAAGCCTAAGCTGGTAAATATACTTCCAAAACCATGTGGTAGAAGCAGCAGCAACATAGAAGGAGGAAGGTATGGGCACGGTGAGAGTGAAACCTTGAGGTTGCTAAGCCAAACTCACCTTCAATCCCCAACCACTAAAGAAATGCACAGATATGGTCCGTATAGGTCGCCGCCTGCAGAGCCTTACAATTTCGCTCATCATCATCATCATCTTCTCCAACCAAATTATCATGTTCCTAGTAGCAGCAGCAGCAACGGAGGAGGCCGTATTGGAAGTGATCTTTCATTATCATCAATGTCGGATCAACAACAATGGCATGCACAAGCCGGGCCTCCGCATTTGTTAGCAACTGCTGCAGCATCATCAGGATTCCCACCGCAAATTAGACCCTCCCAAGGTTGGCTGCAGAAAAATGGGTTCCACTCTCTTATGAGATGA 1539 0.4802 MWDLNDSPDQRKNYESEGCSSSLNDDKGKRVGSVSNSSSSAVLVEDGSEEEDSERGAGTRTTLDNKTSKIFGFSVAHDDTDQPPVTHQFFPVEYSELPLTAAVAGGGGGGGGSFFPRAHWVGVKFGESETPGPGKAVKVSEPMKKSRRGPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRAAIKFRGVEADINFNIEDYEEDLKQMSNLTKEEFVHVLRRQSTGFPRGSSKYRGVTLHKCGRWEARMGQFLGKKYVYLGLFDTEVEAARAYDKAAIKCNGKEAVTNFDPSIYSELNSESSGVAADHNLDLSLGNSSSKHSSNSQTSGNQFPNSATDQHMPPESNWRNGGSKPKLVNILPKPCGRSSSNIEGGRYGHGESETLRLLSQTHLQSPTTKEMHRYGPYRSPPAEPYNFAHHHHHLLQPNYHVPSSSSSNGGGRIGSDLSLSSMSDQQQWHAQAGPPHLLATAAASSGFPPQIRPSQGWLQKNGFHSLMR 512
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed11g1428 512 MobiDBLite consensus disorder prediction 491 505 - -
Aed11g1428 512 ProSiteProfiles AP2/ERF domain profile. 248 305 IPR001471 GO:0003700|GO:0006355
Aed11g1428 512 PRINTS Ethylene responsive element binding protein signature 287 307 IPR001471 GO:0003700|GO:0006355
Aed11g1428 512 PRINTS Ethylene responsive element binding protein signature 249 260 IPR001471 GO:0003700|GO:0006355
Aed11g1428 512 SMART rav1_2 248 311 IPR001471 GO:0003700|GO:0006355
Aed11g1428 512 SMART rav1_2 156 218 IPR001471 GO:0003700|GO:0006355
Aed11g1428 512 MobiDBLite consensus disorder prediction 489 512 - -
Aed11g1428 512 PANTHER AP2 DOMAIN TRANSCRIPTION FACTOR 1 511 - -
Aed11g1428 512 CDD AP2 156 213 IPR001471 GO:0003700|GO:0006355
Aed11g1428 512 MobiDBLite consensus disorder prediction 126 156 - -
Aed11g1428 512 SUPERFAMILY DNA-binding domain 155 213 IPR016177 GO:0003677
Aed11g1428 512 Pfam AP2 domain 247 296 IPR001471 GO:0003700|GO:0006355
Aed11g1428 512 Pfam AP2 domain 156 204 IPR001471 GO:0003700|GO:0006355
Aed11g1428 512 CDD AP2 247 307 IPR001471 GO:0003700|GO:0006355
Aed11g1428 512 MobiDBLite consensus disorder prediction 324 361 - -
Aed11g1428 512 SUPERFAMILY DNA-binding domain 247 307 IPR016177 GO:0003677
Aed11g1428 512 MobiDBLite consensus disorder prediction 14 44 - -
Aed11g1428 512 MobiDBLite consensus disorder prediction 324 397 - -
Aed11g1428 512 MobiDBLite consensus disorder prediction 442 474 - -
Aed11g1428 512 MobiDBLite consensus disorder prediction 441 475 - -
Aed11g1428 512 MobiDBLite consensus disorder prediction 1 63 - -
Aed11g1428 512 Gene3D AP2/ERF domain 155 214 IPR036955 GO:0003700|GO:0006355
Aed11g1428 512 Gene3D AP2/ERF domain 247 306 IPR036955 GO:0003700|GO:0006355
Aed11g1428 512 ProSiteProfiles AP2/ERF domain profile. 156 212 IPR001471 GO:0003700|GO:0006355
Aed11g1428 512 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 1 511 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed11g1428 Aed-Chr11 18848256 18852510 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed11g1428 1 338 AP2-EREBP Transcription Factor Family AT4G36920 68.451 8.68e-133 390
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-AP2 Aed11g1428 AP2 8.7e-10 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed11g1428 K09284 - gmx:100786333 813.142
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed11g1428 11 18848256 18852510 Aed6g0791 6 7127114 7132066 PCT