LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Aed11g1428	ATGTGGGATCTGAATGACTCCCCTGATCAGAGAAAGAACTACGAATCTGAAGGTTGCTCTTCTTCGCTGAATGATGATAAAGGCAAGAGAGTGGGATCTGTTTCCAATTCAAGCTCCTCTGCGGTTCTAGTAGAAGATGGATCGGAAGAAGAAGACAGTGAAAGAGGTGCTGGAACCAGAACAACATTGGACAACAAAACCAGCAAAATATTCGGCTTCTCGGTAGCTCATGATGACACTGACCAACCACCCGTCACTCATCAGTTTTTTCCGGTTGAGTACTCCGAACTGCCCCTCACCGCCGCCGTCGCAGGCGGTGGCGGTGGCGGTGGCGGAAGCTTCTTCCCACGGGCTCACTGGGTAGGCGTCAAATTTGGTGAATCGGAAACACCCGGCCCCGGAAAAGCAGTAAAAGTGTCGGAGCCGATGAAGAAAAGTCGCCGAGGACCACGCTCGCGTAGCTCACAGTATCGAGGAGTTACTTTCTACAGAAGAACCGGTAGATGGGAATCTCATATATGGGATTGTGGAAAGCAAGTTTATTTGGGTGGATTTGACACAGCACATGCAGCTGCTCGTGCTTATGATAGAGCGGCCATTAAGTTCCGCGGGGTGGAGGCAGATATCAATTTCAACATCGAAGATTATGAGGAAGACTTGAAGCAGATGAGCAATTTAACCAAGGAGGAGTTTGTGCACGTACTTCGCCGACAAAGCACTGGATTTCCTAGAGGAAGCTCCAAATATAGAGGTGTAACTTTGCACAAGTGTGGAAGATGGGAGGCTCGAATGGGCCAATTTTTGGGCAAAAAGTACGTTTACCTGGGTTTGTTTGACACCGAGGTTGAAGCTGCAAGGGCATATGACAAAGCAGCAATAAAATGCAATGGCAAAGAGGCCGTCACTAATTTTGATCCCAGCATCTATAGTGAGCTTAATTCTGAATCCTCAGGTGTAGCTGCAGATCACAATTTGGATTTGAGTCTGGGCAATTCGAGCTCTAAACATAGCAGCAATAGCCAAACATCGGGGAATCAGTTCCCAAATTCTGCAACCGATCAGCACATGCCACCCGAATCCAATTGGCGGAATGGGGGAAGCAAGCCTAAGCTGGTAAATATACTTCCAAAACCATGTGGTAGAAGCAGCAGCAACATAGAAGGAGGAAGGTATGGGCACGGTGAGAGTGAAACCTTGAGGTTGCTAAGCCAAACTCACCTTCAATCCCCAACCACTAAAGAAATGCACAGATATGGTCCGTATAGGTCGCCGCCTGCAGAGCCTTACAATTTCGCTCATCATCATCATCATCTTCTCCAACCAAATTATCATGTTCCTAGTAGCAGCAGCAGCAACGGAGGAGGCCGTATTGGAAGTGATCTTTCATTATCATCAATGTCGGATCAACAACAATGGCATGCACAAGCCGGGCCTCCGCATTTGTTAGCAACTGCTGCAGCATCATCAGGATTCCCACCGCAAATTAGACCCTCCCAAGGTTGGCTGCAGAAAAATGGGTTCCACTCTCTTATGAGATGA	1539	0.4802	MWDLNDSPDQRKNYESEGCSSSLNDDKGKRVGSVSNSSSSAVLVEDGSEEEDSERGAGTRTTLDNKTSKIFGFSVAHDDTDQPPVTHQFFPVEYSELPLTAAVAGGGGGGGGSFFPRAHWVGVKFGESETPGPGKAVKVSEPMKKSRRGPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRAAIKFRGVEADINFNIEDYEEDLKQMSNLTKEEFVHVLRRQSTGFPRGSSKYRGVTLHKCGRWEARMGQFLGKKYVYLGLFDTEVEAARAYDKAAIKCNGKEAVTNFDPSIYSELNSESSGVAADHNLDLSLGNSSSKHSSNSQTSGNQFPNSATDQHMPPESNWRNGGSKPKLVNILPKPCGRSSSNIEGGRYGHGESETLRLLSQTHLQSPTTKEMHRYGPYRSPPAEPYNFAHHHHHLLQPNYHVPSSSSSNGGGRIGSDLSLSSMSDQQQWHAQAGPPHLLATAAASSGFPPQIRPSQGWLQKNGFHSLMR	512

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Annotation information

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Seq ID	Length	Analysis	Description	Start	End	IPR	GO
Aed11g1428	512	MobiDBLite	consensus disorder prediction	491	505	-	-
Aed11g1428	512	ProSiteProfiles	AP2/ERF domain profile.	248	305	IPR001471	GO:0003700\|GO:0006355
Aed11g1428	512	PRINTS	Ethylene responsive element binding protein signature	287	307	IPR001471	GO:0003700\|GO:0006355
Aed11g1428	512	PRINTS	Ethylene responsive element binding protein signature	249	260	IPR001471	GO:0003700\|GO:0006355
Aed11g1428	512	SMART	rav1_2	248	311	IPR001471	GO:0003700\|GO:0006355
Aed11g1428	512	SMART	rav1_2	156	218	IPR001471	GO:0003700\|GO:0006355
Aed11g1428	512	MobiDBLite	consensus disorder prediction	489	512	-	-
Aed11g1428	512	PANTHER	AP2 DOMAIN TRANSCRIPTION FACTOR	1	511	-	-
Aed11g1428	512	CDD	AP2	156	213	IPR001471	GO:0003700\|GO:0006355
Aed11g1428	512	MobiDBLite	consensus disorder prediction	126	156	-	-

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Aed11g1428	Aed-Chr11	18848256	18852510	Dispersed/Wgd

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Aed11g1428	1	338	AP2-EREBP Transcription Factor Family	AT4G36920	68.451	8.68e-133	390

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Transcription factors information

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Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	AP2 or ERF-AP2	Aed11g1428		AP2	8.7e-10	CL0081

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Aed11g1428	K09284		-	gmx:100786333	813.142

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Event-related genes

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Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Aed11g1428	11	18848256	18852510	Aed6g0791	6	7127114	7132066	PCT

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