Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed11g1420 ATGGGTGACATGTACCACTTTGACAAGAACCTCTCTTCACAAGACGAAATCTCACTTTTTCTGCGTCAGATTCTGCTCCGTTCATCTTCACCACCTTCTCACTCCTCCATGCCTGGATCCTGCACCACCAACGCCGCTCCTCACCTAAACGTAAATGCACACGGCCCTTCTCTCGCTGCGTCGCAGCTCCAAGATGGGAAGATCTTGGCCGTTGATTCCACTGCTTCAGCTGCTGCTGCTTGCAGTTCCTTCAAGGCCCAGGCTGCAACTGCAAATGTGTCTTCTTCTTCTGTTGGACTCAGTGAGAACGAGAATGATGACTATGATTGTGAAAGTGAGGAGGGTGTTGAGGCTTTGGGCGAAGAAGTTCCAACAAAGCCTGCTTCTAGGAATTCATCTAAAAGATCAAGAGCTGCAGAAGTTCATAACTTGTCTGAGAAGCAGCGAAGAAGGAGTAGGATCAACGAGAAAATGAAGGCTTTGCAAAATCTAATTCCAAATTCCAACAAGACGGATAAGGCTTCAATGCTCGATGAAGCTATTGAATACCTTAAACAGCTTCAGCTCCAAGTACAGATGCTGTCAATGAGAAATGGGTTGAGTTTGCATCCTATGTGCTTTCCTGAAGGAGGGTTGCAGGCTCTCCAGTTGTCTCAGATGGGTATGTCAGCTACTCTGCCTCTGCACCAAGACAACCACCCCTTGCACTATGCATCCAAACACCCTTCTGTGCCCTATCCTCCATACTCAGAAACTTCTTTTGGCCTGGAATCCCGAATCCAACCGGATATGAAACCTCTTCAACACAAAGGAGGAGGATCTTCTGATCAGGCAATACGCGGGGAAGACATATTGCACTACCAGCAATCTCACGTTGTGAAAGAATTCGAATCAGGCACGACACTATCGTTCCCCTTTGACACGCAAGCATGTGAAGTAGCCAAGGACAACAACGTCTCTTTGCAACCATGCATTGGCGGAAGAGATAAGATCATAAGAAGAAATAGTGAGACCAACATTAACATTGTTGGTAGGTAA 1038 0.4682 MGDMYHFDKNLSSQDEISLFLRQILLRSSSPPSHSSMPGSCTTNAAPHLNVNAHGPSLAASQLQDGKILAVDSTASAAAACSSFKAQAATANVSSSSVGLSENENDDYDCESEEGVEALGEEVPTKPASRNSSKRSRAAEVHNLSEKQRRRSRINEKMKALQNLIPNSNKTDKASMLDEAIEYLKQLQLQVQMLSMRNGLSLHPMCFPEGGLQALQLSQMGMSATLPLHQDNHPLHYASKHPSVPYPPYSETSFGLESRIQPDMKPLQHKGGGSSDQAIRGEDILHYQQSHVVKEFESGTTLSFPFDTQACEVAKDNNVSLQPCIGGRDKIIRRNSETNINIVGR 345
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed11g1420 345 MobiDBLite consensus disorder prediction 133 152 - -
Aed11g1420 345 MobiDBLite consensus disorder prediction 92 152 - -
Aed11g1420 345 SMART finulus 143 193 IPR011598 GO:0046983
Aed11g1420 345 PANTHER TRANSCRIPTION FACTOR PIF1-RELATED 12 289 IPR031066 -
Aed11g1420 345 MobiDBLite consensus disorder prediction 104 118 - -
Aed11g1420 345 Pfam Helix-loop-helix DNA-binding domain 141 188 IPR011598 GO:0046983
Aed11g1420 345 PANTHER TRANSCRIPTION FACTOR SPATULA 12 289 - -
Aed11g1420 345 Coils Coil 144 164 - -
Aed11g1420 345 CDD bHLH_AtPIF_like 137 200 - -
Aed11g1420 345 Gene3D - 132 197 IPR036638 GO:0046983
Aed11g1420 345 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 138 187 IPR011598 GO:0046983
Aed11g1420 345 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 134 198 IPR036638 GO:0046983
Aed11g1420 345 Coils Coil 177 197 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed11g1420 Aed-Chr11 18792168 18795217 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed11g1420 5 220 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G36930 52.049 3.93e-52 175
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Aed11g1420 HLH 1.2e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed11g1420 - - gmx:100793754 471.855