Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed11g1418 ATGGTGGATGATGAGCCAGTAAGCGGAAGACGAAGGCCGAGGGGACCGGAGGCCACCGGCCGCAGCCAAGCCTTGGAGCGTCTCAAGGCCCTCCGCAACCACGGCGGCCGTCGGTCCGACGGCACCGGCCCCCAAATCAGGTTAGAAAACCCCGTCTACGACACCGTCCCGGAGGACGAGTACAACGCTCTCGTCGCTAAGCGCCGCGAGCAGGCGCGCTCCTTCATTGTCGACGATGAAGGACTCGGCTATGGTGACGAGGGTGAGGAGGAGGACTGGTCCCAAGCCGGATTCAACCTCTCCTCCGACGAATCCGAAGGCGAGTCGGAGAAGCCAAAGCGGAAGAAGGCTGAGAAGAAGGATCCTCAGCCGAAACGACCTTCTTCCTCGCTCTCCGCCGCCGCGGCCATGATGGGCGGCCAGAGGCTGTCGTCGATGTTCACTTCCTCTGTTTTCAAGAAGAGCAGAGACGACAAAGCCTCCGAGAGCATCGTCGACGATGTCATTGCGGAGTTCGCTGCGGACGAGACTGATAGATTGAAGCGTAAAAGAGCTCAAGGGAATTCCTCTTCCTCTTCCGTCACAAAGGGTGCTTTGAGGATTAACAACACGGTTAGAGATAAGCCTTCTGTTGATTTGATTGGAGCTTCTTCGTTGCTGCCGCCGCTGGCAAATGGTAACGCTGAATCTGTTAAGGTTGTTGAGAGTGATGGTTTTGACTCGGGGTTTGAGCAAAAGAGCGAGGTGGTTCATGAAATTGAAGATTCGGCGCCTGGAAGTTCTGAGAATGGACAGGCACCAGCAGTGGAATCGGATGATTGTAAAATTAACGAGGGAATAGTTGAGGGGAAAGAGATGAAGAAAGCTGAAATTGAAGTGAAATTGGGTGCGAAAAAGGAGGTGTTCACCTTGAATGCAAAGGTTAAAGAAGACGAGGATCCGGCATTGTCCGCGACTGCTGGTTGGAAAGAAGCGATGAGTGGTGCCAGTGGTGTTGATTCGAAGGATGCTTTACAAAACCAACAGTGCTCAGAGTTTGATTTGGAGGAAGATAGATCATTGCCTTTCTATATACTTGATGCATACGAGGAGTTTTATGGAGAAAACAGGGGCACCATTTATCTGTTTGGGAAGGTCAAAACAGGTGATTTTTATCAGAGTTGCTGTGTTATTGTGAAGAACATGCAGAGGTGTGTCTATGCAGTTCCAAGTCAATCTTTGCATTGCACAGAAGAGTTTATGAGCCTTGAGAGAGATGTTCAAGAGTCTCGAATTTCTTCTGCAGATTTCTTTAAAAAGCTGCAAGATGCAGTTTCTGATGTTAAGAAAGAGATAGCACAGCATCTGGTGAATTTGGAAGTTTCTAACTTTAGCATGGCTCCTGTTAAGAGGAAATACACATTTGAACGATCTGAAATTCCCGCAGGTGAAAATTATGTGGTGAAAATCAATTATTCATTCAAGGATCCAGTGCTTCCAGTAGATCTCAAAGGAGAAAGTTTCTGTTCTCTCTTAGGAACTGGTAGCAGTGCGCTTGAGCTTTTTTTGATTAAAAGAAAGATAAAGGGGCCTTCATGGCTACAGGTTTCAAACTTTTGTACAAGTTCAGCTTCTCGAAGGGTTAGCTGGTGCAAATTTGAAGTGACTGTTGACTCTCCTAAACAAATAAGGAGTTCAGCTCCTTCAAAAATCACTTCTAAGATTCCTCCTGTGGTTGTTGCAGCAATAAACTTGAAAACCACCATAAATGAAAAACAGAACATAAATGAGATTGTATCAGCATCTGTTGTCTGTTGCAACATGGTTAAGATTGACACTCCTATGATGGCTTCAGAGTGGAAGAGACCTGGAAGGCTGACCCATTTTACCGTTATTCGTAAACTGGATGGGAGTATATTTCCAATGGGGTTCAACAAGGAGGTTACGGACAGAAACTCACAAGCTCGTTCAAATATTCTGTGTGCTGAAAGCAGGCTTGACCTGTCTATTAACCTTGTTTTCAGTGAAAGAGCTTTGTTGAACCGATTGATGTTAGAATTACACAAGTTGGATAGCGATGTTCTTGTTGGACATAATATTTCTGGATTTGACCTGGATGTTCTTCTCCACAGATCCCAGGCTTGCAAAGTAGCAAGCAGCATGTGGTCGAAATTAGGCCGCCTCAACCGTTCTATAATGCCTAAAATTAGAAGAAGCAAGGTTTTTGGTTCTGGAGCAGATCCTGGTATCATGTCCTGCATTGCTGGTCGACTTCTTTGTGATACATTCTTGTGTTCCCGTGACCTATTAAAGGAGGTTAGTTATTCTTTAACTCACCTTGCAAAATCACATCTGAACGAGTTTCGGAAGGAAGTTGCTCCACATGAAGTTCCAAAAATGTTCCAAACAGCAGAATCCCTAATGGAGCTTATTGAATATGGTGAGACAGATGCATGGTTGTCTATGAAACTAATGTTTTATTTAAGTATTCTTCCGCTCACACGTCAGCTGACTAATATAAGTGGTAATCTGTGGGGGAAAACTCTTCAGGGTGCTCGAGCACAGAGAGTGGAATATCTTTTGCTGCATACTTTCCATGCAATGAAATATATGGTGCCAGACAAGTTCTCAAACTATGCAAAAGAAACAAAATTGATGAAACGCAGAGTAACTAATGATGTGGAGGATAGCAACTTTGATGTAGATATTGATGATGCAAATGACAACAATGATGCCTCTGAAGCTGCTGATAATAACAAAAGCAAAAAGGGCCCTTCGTATGCCGGGGGACTGGTTTTGGAGCCAAAGAAGGGTCTGTATGACAAATATATCTTACTTCTGGACTTCAACAGTCTTTATCCTTCTATTATTCAGGAATACAATATCTGCTTCACAACTGTTGAAAGATCTTTGGACGGATCTTTTCCTCGTCTACCATCTTGTAAAACAACTGGAGTCTTGCCAGAGGTGCTGAAAAATCTGGTTGATCGGAGGAAAAGGGTTAAGTCTTTGATAAAGAATGAAAAAGACAAGAATGGAAAAACTGATCCTATTAGAGTTCAACAATTGGATATTCAGCAGCAAGCACTGAAGCTTACTGCAAACAGTATGTATGGGTGTCTGGGATTTTCCAATTCAAGATTTTATGCTAAGCCATTAGCTGAGCTCATAACTTCACAAGGAAGGGAGATACTACAAAGTACTGTTGATCTTGTTCAGAATAACTTGAATTTAGAGGTGATCTATGGTGATACTGATTCAATAATGATTTACAGTGGGCTAGATGACATTAAGGAAGCTAATAAAATTGCTGTAAGAGTTATTCAAGAGGTCAATAAGAAATATAGATGCTTGGAAATTGATCTCGATGGTTTATATAAAAGGATGCTGCTTCTTAAGAAAAAGAAGTATGCAGCTGTAAAGTTGCTGTTTAAAGATGGCACCCCATATGAGGTTATTGAACGTAAAGGTCTTGACATTGTTCGTCGTGACTGGAGCTTATTAGCTAAAGAACTAGGAGATTTTTGCTTGACTCAAATTTTGTCCGGAGGGTCATGTGAAGATGTCGTGGAGTCAATCCACAACTCGCTAATGAAGATACAAGAAGAAATGAGGAACGGACAAGTACCATTAGAGAAATATGTCATTACAAAGACATTGACTAAACCTCCTGAAGCATATCCTGATGCCAAGAACCAGCCACATGTTCTTGTGGCACAAAGATTGAAGCAACAAGGTCACTCTTCTGGTTGCTCTGTTGGTGATACAATCCCTTATATAATTTGCTGTGAGCAGGGAACAAGCCCGGAAAGATTGGCTGATTGTTTAGGGCTCGACACGTCAAAGTTTCATCATAAATCGAGTGAAGCTTTAAATGATGATTCAACAAGCCCATTATTGTCTGTTGCTGATGATGAGGAGAGGTATCGGGGATGTGAGCCGTTGGTCTTGTCATGCCCTAGCTGCTCTGGTACATTTGACTGCCCACCTGTCTTTAAATCTATTTGTTTGTTGGCAACAAGCGAAAGGCCAACCCCGGACGAAGCTGAGTACAATTTCTGGCGTAAGCTGAGCTGTCCTAGATGCCCAGAAGATGTTAAAATTTCTCCTGCACTCATAGCTAATCAGGTCAAAAGGCAAGCAGAGCAGTTTGTTTTAATGTACTATAGAGGTTTACAGGTGTGTGATGATGAAACGTGTAAGCATACAACGCGAAGTGTTAGCCTTCGGTTGGTTGGTGATTCTGAGAGAGGAACTGTTTGTCCAAATTATCCTCGCTGCAATGGTCGTTTAGTTAGAAAGTACACTGAAGCAAACTTGTACAAGCAGCTCTCGTATTTTTGCCATGTGTTCGATACTGTTTCATGCACAGAAAAGATGGAGGGAAAATCTAGAATACCGGTGGAGAAAGAGTTGATAAAAATTAGGGAGATGATGAAATCGGTAGCATCAACAGCACAGAAGATCAGGGACCGTTGTGCCTATGGGTGGGTGAGACTCGAGAATCTGGTCATTTCAGTTTAA 4503 0.4339 MVDDEPVSGRRRPRGPEATGRSQALERLKALRNHGGRRSDGTGPQIRLENPVYDTVPEDEYNALVAKRREQARSFIVDDEGLGYGDEGEEEDWSQAGFNLSSDESEGESEKPKRKKAEKKDPQPKRPSSSLSAAAAMMGGQRLSSMFTSSVFKKSRDDKASESIVDDVIAEFAADETDRLKRKRAQGNSSSSSVTKGALRINNTVRDKPSVDLIGASSLLPPLANGNAESVKVVESDGFDSGFEQKSEVVHEIEDSAPGSSENGQAPAVESDDCKINEGIVEGKEMKKAEIEVKLGAKKEVFTLNAKVKEDEDPALSATAGWKEAMSGASGVDSKDALQNQQCSEFDLEEDRSLPFYILDAYEEFYGENRGTIYLFGKVKTGDFYQSCCVIVKNMQRCVYAVPSQSLHCTEEFMSLERDVQESRISSADFFKKLQDAVSDVKKEIAQHLVNLEVSNFSMAPVKRKYTFERSEIPAGENYVVKINYSFKDPVLPVDLKGESFCSLLGTGSSALELFLIKRKIKGPSWLQVSNFCTSSASRRVSWCKFEVTVDSPKQIRSSAPSKITSKIPPVVVAAINLKTTINEKQNINEIVSASVVCCNMVKIDTPMMASEWKRPGRLTHFTVIRKLDGSIFPMGFNKEVTDRNSQARSNILCAESRLDLSINLVFSERALLNRLMLELHKLDSDVLVGHNISGFDLDVLLHRSQACKVASSMWSKLGRLNRSIMPKIRRSKVFGSGADPGIMSCIAGRLLCDTFLCSRDLLKEVSYSLTHLAKSHLNEFRKEVAPHEVPKMFQTAESLMELIEYGETDAWLSMKLMFYLSILPLTRQLTNISGNLWGKTLQGARAQRVEYLLLHTFHAMKYMVPDKFSNYAKETKLMKRRVTNDVEDSNFDVDIDDANDNNDASEAADNNKSKKGPSYAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQEYNICFTTVERSLDGSFPRLPSCKTTGVLPEVLKNLVDRRKRVKSLIKNEKDKNGKTDPIRVQQLDIQQQALKLTANSMYGCLGFSNSRFYAKPLAELITSQGREILQSTVDLVQNNLNLEVIYGDTDSIMIYSGLDDIKEANKIAVRVIQEVNKKYRCLEIDLDGLYKRMLLLKKKKYAAVKLLFKDGTPYEVIERKGLDIVRRDWSLLAKELGDFCLTQILSGGSCEDVVESIHNSLMKIQEEMRNGQVPLEKYVITKTLTKPPEAYPDAKNQPHVLVAQRLKQQGHSSGCSVGDTIPYIICCEQGTSPERLADCLGLDTSKFHHKSSEALNDDSTSPLLSVADDEERYRGCEPLVLSCPSCSGTFDCPPVFKSICLLATSERPTPDEAEYNFWRKLSCPRCPEDVKISPALIANQVKRQAEQFVLMYYRGLQVCDDETCKHTTRSVSLRLVGDSERGTVCPNYPRCNGRLVRKYTEANLYKQLSYFCHVFDTVSCTEKMEGKSRIPVEKELIKIREMMKSVASTAQKIRDRCAYGWVRLENLVISV 1500
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed11g1418 1500 PANTHER DNA POLYMERASE ALPHA CATALYTIC SUBUNIT 16 1257 - -
Aed11g1418 1500 PANTHER DNA POLYMERASE ALPHA CATALYTIC SUBUNIT 1258 1498 - -
Aed11g1418 1500 Pfam DNA Polymerase alpha zinc finger 1296 1496 IPR015088 GO:0003887|GO:0006260
Aed11g1418 1500 MobiDBLite consensus disorder prediction 186 200 - -
Aed11g1418 1500 Pfam DNA polymerase alpha subunit p180 N terminal 25 93 IPR024647 -
Aed11g1418 1500 Gene3D - 1151 1296 IPR042087 -
Aed11g1418 1500 MobiDBLite consensus disorder prediction 175 201 - -
Aed11g1418 1500 Coils Coil 984 1004 - -
Aed11g1418 1500 Gene3D Helix hairpin bin 978 1033 - -
Aed11g1418 1500 Coils Coil 1101 1121 - -
Aed11g1418 1500 Pfam DNA polymerase family B 837 1274 IPR006134 GO:0000166|GO:0003677
Aed11g1418 1500 Gene3D - 396 522 - -
Aed11g1418 1500 MobiDBLite consensus disorder prediction 1 17 - -
Aed11g1418 1500 Gene3D DNA Polymerase alpha, zinc finger 1297 1486 IPR038256 -
Aed11g1418 1500 SUPERFAMILY DNA/RNA polymerases 911 1264 IPR043502 -
Aed11g1418 1500 SMART polmehr3 569 1087 IPR006172 GO:0000166|GO:0003676|GO:0003887
Aed11g1418 1500 MobiDBLite consensus disorder prediction 76 139 - -
Aed11g1418 1500 ProSitePatterns DNA polymerase family B signature. 1075 1083 IPR017964 GO:0000166|GO:0003676
Aed11g1418 1500 MobiDBLite consensus disorder prediction 104 125 - -
Aed11g1418 1500 PRINTS DNA-directed DNA-polymerase family B signature 937 950 IPR006172 GO:0000166|GO:0003676|GO:0003887
Aed11g1418 1500 PRINTS DNA-directed DNA-polymerase family B signature 1073 1081 IPR006172 GO:0000166|GO:0003676|GO:0003887
Aed11g1418 1500 PRINTS DNA-directed DNA-polymerase family B signature 1020 1032 IPR006172 GO:0000166|GO:0003676|GO:0003887
Aed11g1418 1500 Pfam DNA polymerase family B, exonuclease domain 386 771 IPR006133 -
Aed11g1418 1500 SUPERFAMILY Ribonuclease H-like 350 866 IPR012337 -
Aed11g1418 1500 Gene3D - 356 555 - -
Aed11g1418 1500 CDD POLBc_alpha 913 1272 IPR045846 GO:0003887|GO:1902975
Aed11g1418 1500 CDD DNA_polB_alpha_exo 569 829 - -
Aed11g1418 1500 Gene3D - 569 892 IPR036397 GO:0003676
Aed11g1418 1500 TIGRFAM pol2: DNA polymerase (pol2) 52 1260 - -
Aed11g1418 1500 MobiDBLite consensus disorder prediction 894 920 - -
Aed11g1418 1500 MobiDBLite consensus disorder prediction 1 54 - -
Aed11g1418 1500 Gene3D Palm domain of DNA polymerase 906 1136 IPR023211 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed11g1418 Aed-Chr11 18774202 18786840 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed11g1418 3 1498 Core DNA Replication Machinery Family AT5G67100 57.125 0.0 1698
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed11g1418 K02320 - gmx:100798779 2538.45