Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed11g1412 ATGGACGTGGACATACTGAAAACTTGTACGAGTCATGACAGCAGCATGGACATGATGATGATGATGCAAATGGAAAAGTTCCATGAATTATGTGAACCTTTTTATAACAACACCACTACTAGTACTCTTCTCTACCCAGAAAACGAGTTCTTAAACTCCACCACCACTCTACCCGTCTTCTCCAACGTTATAACTCCACCACCCACTTTGATTAATCCGCTACCACCTTCTTCTTCTTCCACCAATTTCGTTCTACACCAACCCATGACACCCCCTACTCTTGAGCCCAACCCTTCTTCGTTTTCGGAGAAGAAGAACTCTGTGGCGGCCATGAGGGAGATGATTTTCCGCGTGGCAGTGATGCAACCTGTTCATATAGACCCTGAATCCGTGAAGCCACCGAAGAGAAGGAACGTGAAGATTTCGAAGGATCCTCAGAGTGTGGCGGCGAGGCACAGAAGAGAAAGGATAAGCGAGAGAATAAGGATCCTTCAGAGACTAGTTCCTGGTGGGACCAAAATGGACACGGCTTCTATGTTGGATGAGGCCATACACTACGTCAAGTTCTTGAAGAAACAAGTGCAGACGCTGGAACAAGCTGGGGCAACTAGACCCTTGAATGTTGTTGGCTTCCCTAGTACCACTACCACTACTAATAATGTTAATTATTCTGGTTTTGTCAAGAGTTGCCAACCTTATCCAATGCTGGGTTCTGCAGCTTCTAAACAATTGCTCAGTTGA 741 0.4575 MDVDILKTCTSHDSSMDMMMMMQMEKFHELCEPFYNNTTTSTLLYPENEFLNSTTTLPVFSNVITPPPTLINPLPPSSSSTNFVLHQPMTPPTLEPNPSSFSEKKNSVAAMREMIFRVAVMQPVHIDPESVKPPKRRNVKISKDPQSVAARHRRERISERIRILQRLVPGGTKMDTASMLDEAIHYVKFLKKQVQTLEQAGATRPLNVVGFPSTTTTTNNVNYSGFVKSCQPYPMLGSAASKQLLS 246
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed11g1412 246 SMART finulus 147 196 IPR011598 GO:0046983
Aed11g1412 246 Coils Coil 180 200 - -
Aed11g1412 246 CDD bHLH_AtIND_like 142 198 - -
Aed11g1412 246 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 141 190 IPR011598 GO:0046983
Aed11g1412 246 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 145 200 IPR036638 GO:0046983
Aed11g1412 246 Pfam Helix-loop-helix DNA-binding domain 151 190 IPR011598 GO:0046983
Aed11g1412 246 Gene3D - 140 206 IPR036638 GO:0046983
Aed11g1412 246 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 1 232 IPR045843 GO:0003700|GO:0006355
Aed11g1412 246 PANTHER TRANSCRIPTION FACTOR HEC2 1 232 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed11g1412 Aed-Chr11 18735905 18736645 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed11g1412 19 199 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G50330 59.574 8.98e-50 161
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Aed11g1412 HLH 1.5e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed11g1412 - - gmx:100796649 337.806