Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed11g1410 ATGGAGCAGCGAAAGCTTGTGGTTTTGGGGATTCCGTGGGATGTCGACACTGAGGGATTGAGGGAATATATGGGTAAGTTTGGGGAGCTGGAAGATTGCATTGTCATGAAGGAGCGGTCAACTGGGCGGTCTCGTGGTTTTGGATATGTTACATTTGCTTCAGTGGATGATGCTAAGGAAGTATTATCAAGTGAACATATTCTTGGTAATAGGACGCTGGAAGTCAAAGTGGCAACACCAAAGGAGGAAATGAGGGCACCTGTCAAAAAGGTTACTAGAATATTTGTAGCCAGGATTCCACAATCTGTAACAGAAGCTACTTTCCGAAGTCATTTTGAGAAATATGGTGAAATAACAGATTTGTACATGCCAAAGGATCAAGGCTCCAAAATGCATCGGGGAATTGGTTTCATCACTTTTGCAAGTGCAGATTCTGTGGAGAATCTGATGTCCGAAACCCATGAACTGGGAGGTTCTACTGTGGTGGTTGATCGAGCTACTCCTAAGGATGATGAATTTAAGCCAATTGGCAGAATGCCGCCGCAGCCGCCGCCGCCACAAGGAGGATATGGTGCATACAATGCTTATATCTCAGCAGCCACTAGATATGCAGCACTTGGTGCTCCTACTTTGTATGATCATCCTGGCCCAGTTTATGGAAGGGGAGGAGACCCTGCTCGGAGAACTAGTAAAAAAATATTTGTCGGCCGTCTTCCCCCAGAAGCAACTGTTGAGGATCTTCGTCAATATTTTGGAAGATTTGGCCGTATATTAGATGTTTATGTTCCGAGGGATCCTAAGAGAACAGGTCATAGAGGTTTTGGATTTGTTACTTTTGCTGAAGATGGTGTAGCAGATCGTGTCTCTCGAAGGTCTCATGAGATTTGTGGACATCAGGTGGCAATAGATTCAGCTACGCCTGTTGACGATGCAGGGCCCAGTGGGAATTTTATGATGAATAGTATGGAATCTTTTGGGGGATATGGTGGTCCTGTGCGATCGTATGGGAGGATGTATGGTAGCTTAGACTTCGATGATTGGGGTTATGGAATCGGGAGACCATCAAGAGCAGATTGGAGATATAGACCATACTAG 1095 0.453 MEQRKLVVLGIPWDVDTEGLREYMGKFGELEDCIVMKERSTGRSRGFGYVTFASVDDAKEVLSSEHILGNRTLEVKVATPKEEMRAPVKKVTRIFVARIPQSVTEATFRSHFEKYGEITDLYMPKDQGSKMHRGIGFITFASADSVENLMSETHELGGSTVVVDRATPKDDEFKPIGRMPPQPPPPQGGYGAYNAYISAATRYAALGAPTLYDHPGPVYGRGGDPARRTSKKIFVGRLPPEATVEDLRQYFGRFGRILDVYVPRDPKRTGHRGFGFVTFAEDGVADRVSRRSHEICGHQVAIDSATPVDDAGPSGNFMMNSMESFGGYGGPVRSYGRMYGSLDFDDWGYGIGRPSRADWRYRPY 364
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed11g1410 364 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 231 307 IPR000504 GO:0003723
Aed11g1410 364 PANTHER OS01G0945800 PROTEIN 3 364 - -
Aed11g1410 364 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 87F-RELATED 3 364 - -
Aed11g1410 364 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 92 168 IPR000504 GO:0003723
Aed11g1410 364 Gene3D - 222 310 IPR012677 -
Aed11g1410 364 SMART rrm1_1 93 164 IPR000504 GO:0003723
Aed11g1410 364 SMART rrm1_1 5 76 IPR000504 GO:0003723
Aed11g1410 364 SMART rrm1_1 232 303 IPR000504 GO:0003723
Aed11g1410 364 SUPERFAMILY RNA-binding domain, RBD 88 191 IPR035979 GO:0003676
Aed11g1410 364 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 94 152 IPR000504 GO:0003723
Aed11g1410 364 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 6 73 IPR000504 GO:0003723
Aed11g1410 364 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 233 287 IPR000504 GO:0003723
Aed11g1410 364 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 4 80 IPR000504 GO:0003723
Aed11g1410 364 Gene3D - 1 86 IPR012677 -
Aed11g1410 364 Gene3D - 87 175 IPR012677 -
Aed11g1410 364 SUPERFAMILY RNA-binding domain, RBD 227 330 IPR035979 GO:0003676
Aed11g1410 364 SUPERFAMILY RNA-binding domain, RBD 3 85 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed11g1410 Aed-Chr11 18715845 18719989 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed11g1410 6 280 Eukaryotic Initiation Factors Gene Family AT2G36660 21.505 2.97e-12 65.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed11g1410 K14411 - gmx:100795240 705.671