Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed11g1386 ATGTCATCATCATCGAATTCGCCGTGCGCGGCGTGCAAGTTTCTGAGGCGAAAGTGCACGCAGGAGTGCGTGTTCGCGCCGTACTTTCCGCCGGACAACCCTCAGAGGTTCGCTTACGTGCACAAGGTTTTCGGCGCCAGCAACGTGGCGAAGCTTCTCAACGAGCTGAGCGCGGCGCAGCGAGACGACGCCGTTAAGTCTCTCGCGTACGAGGCCGAGGCGCGTCTCCGGGATCCTGTATACGGTTGCGTTGGCCTCATCTCCGTCCTCCAACACAAGCTAAGACAGATCCAGGTGGAACTCAACAATGCAAAGAAAGAACTCGCAACGTACATAGGCCCACAAGCCCTTCAAGGAATTCCCGCACCTATGCTCCAACAACACCCTAACAACCCTTTTAATGGTGCCATGTACGGCAACATGCCGACTGCGACGGCATCCCTCCACGGCGGGCAGTTGTTGATTCGCGACGCGCAGCCGCAGCCGCAGCAGCAGCAGATCTTGGAGGCGCAGCAGCTGGCTGCGGCAGTGGCGGCGAGGGAACAGCAGGAGATGTTTAGAAGTTATGAACATCAGCAGCAGCAGGAGTTTCTACGGTTCAGTGGTGGGTTCGATGTGGGTTCGGTTTCTTCTGCTGGTGGGTTCAGCCAGGTGTCCCCAGCTGCTGGCTCTGATCAATTGTCTCCTTCGTTGGCTTTGGGATCCTTTGATAACGCTTATCACATGCAGCAGCAACCACAGCAAGGAGAACAACACCATCATCATCCTCATCACATTCCCCTTGAGGCGCAGTTACTTCTCCCTCCGCAGCAGAAGCAACCGCAGCAACAAATTCATGACTCGCAACTGCCGCTTCACCATCAACATCCTGAGAGCGAGGAGTGTAGGAGTGTTGCCCTGCGCCTTTGTGCTTTTTCGTCAAACAATTTTCAGCCTAGTTCTTACCTGCCGGATACAAATGAATAG 966 0.5528 MSSSSNSPCAACKFLRRKCTQECVFAPYFPPDNPQRFAYVHKVFGASNVAKLLNELSAAQRDDAVKSLAYEAEARLRDPVYGCVGLISVLQHKLRQIQVELNNAKKELATYIGPQALQGIPAPMLQQHPNNPFNGAMYGNMPTATASLHGGQLLIRDAQPQPQQQQILEAQQLAAAVAAREQQEMFRSYEHQQQQEFLRFSGGFDVGSVSSAGGFSQVSPAAGSDQLSPSLALGSFDNAYHMQQQPQQGEQHHHHPHHIPLEAQLLLPPQQKQPQQQIHDSQLPLHHQHPESEECRSVALRLCAFSSNNFQPSSYLPDTNE 321
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed11g1386 321 Coils Coil 87 107 - -
Aed11g1386 321 MobiDBLite consensus disorder prediction 269 290 - -
Aed11g1386 321 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 3 271 - -
Aed11g1386 321 Pfam Lateral organ boundaries (LOB) domain 8 105 IPR004883 -
Aed11g1386 321 PANTHER LOB DOMAIN-CONTAINING PROTEIN 36-LIKE 3 271 - -
Aed11g1386 321 ProSiteProfiles LOB domain profile. 7 108 IPR004883 -
Aed11g1386 321 MobiDBLite consensus disorder prediction 269 283 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed11g1386 Aed-Chr11 18502238 18504799 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed11g1386 3 241 AS2 family AT5G66870 54.135 3.79e-75 231
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Aed11g1386 LOB 1.1e-41 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed11g1386 - - gmx:100816778 440.269
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed6g0855 6 8345856 8347240 Aed11g1386 11 18502238 18504799 PCT