Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed11g1384 ATGGTAGTTTGCGACTTCAACTTGTGGGAGCATTGTCTCGCTGAGACTCTGAGGAAAACAACAACACCCAAACCAAATACCACCATGGACCTCAGCTTGGATTTGACTTTGGGCTTTGTCCCCAAACCCCTTTCCCTCTTTTTCGGTGACGTTTCTGGGAACAGAGACAAAGTGGCCACGCTCGACGGCTTCCTCCAGAGACTGGAGGGAGAATTGGGCAAGGTGGAGGCTTTCAAACGCGAGCTTCCTCTTTGCATGCTCCTCCTTAACGATGCTATAGGGAGATTGAAGGAGGAAAAAGTGAAGTGTTCGGGAATGCAAGATCCGTCACTGAAAATCACTTCTGGAGCAAATGAAGTTGAAAATGAAAGCTCAGAGAAAAAGAATTGGATGAGTTCAGCGCAGCTTTGGAGCACTCAAAAAGCCAAATCGACGAATGAGGAAGCTGATAGGTCTGTGCCAGACAAGTCAGTTAATGGAAATTCGTGTGTCCCCGAAAAAAACAGTTCGCAAGTTCCGAACTCTGGTTTGATGGCTCGTGCTTCTAAACTGAGTCATAGCAATTCCAAGAGTCTTGGCGGAGATACCAGCTCTGTCTCGTCTTTGCTCCGTGTTGAGATACAGAGTCACCCACAACCGCCGCAACACATGCAGCAAAATCCCAGGAAACAACGCCGGTGCTGGTCGCCGGAGCTACACAGGCGCTTTGTGGACGCACTTCAACAACTGGGTGGACCACAAGTGGCCACTCCAAAACAGATTAGAGAGCTGATGCAGGTGGATGGCCTTACAAATGATGAAGTGAAAAGCCATTTGCAAAAGTACAGGCTTCATGTTAGGAGATTCCCAGTTTCTTCTTCAGTTGGCCTGGCTGATAATGGGTCATGGATGGACCAAGATGAATGTGGGGATAAATCAAATGGAAACATGTCAATGCCAATGTCACAGCCTGGTTCTCCACAAGGTCCTCTGACACCTCTCCTCCTAGGAGGAGGAGGAGGAGGAGGATCTGCTAAGGGTCTCTCAAGCCCTGGACGGAACAGTGTGGATGCAGAAGATGAACAATCAGATTCCCGGAATTGGAAAGGAGGGCTCCACCACCACCTTGATGCTGATAATCAGAGCCTCTGA 1131 0.4898 MVVCDFNLWEHCLAETLRKTTTPKPNTTMDLSLDLTLGFVPKPLSLFFGDVSGNRDKVATLDGFLQRLEGELGKVEAFKRELPLCMLLLNDAIGRLKEEKVKCSGMQDPSLKITSGANEVENESSEKKNWMSSAQLWSTQKAKSTNEEADRSVPDKSVNGNSCVPEKNSSQVPNSGLMARASKLSHSNSKSLGGDTSSVSSLLRVEIQSHPQPPQHMQQNPRKQRRCWSPELHRRFVDALQQLGGPQVATPKQIRELMQVDGLTNDEVKSHLQKYRLHVRRFPVSSSVGLADNGSWMDQDECGDKSNGNMSMPMSQPGSPQGPLTPLLLGGGGGGGSAKGLSSPGRNSVDAEDEQSDSRNWKGGLHHHLDADNQSL 376
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed11g1384 376 MobiDBLite consensus disorder prediction 107 174 - -
Aed11g1384 376 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 27 366 IPR044787 GO:0003700|GO:0006355
Aed11g1384 376 MobiDBLite consensus disorder prediction 350 369 - -
Aed11g1384 376 Pfam Myb-like DNA-binding domain 225 276 IPR001005 -
Aed11g1384 376 Gene3D - 222 279 - -
Aed11g1384 376 MobiDBLite consensus disorder prediction 300 322 - -
Aed11g1384 376 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 223 278 IPR006447 GO:0003677
Aed11g1384 376 MobiDBLite consensus disorder prediction 127 143 - -
Aed11g1384 376 SUPERFAMILY Homeodomain-like 221 281 IPR009057 -
Aed11g1384 376 MobiDBLite consensus disorder prediction 155 174 - -
Aed11g1384 376 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 220 280 IPR017930 -
Aed11g1384 376 MobiDBLite consensus disorder prediction 288 376 - -
Aed11g1384 376 PANTHER MYB-LIKE DNA-BINDING DOMAIN, SHAQKYF CLASS PROTEIN 27 366 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed11g1384 Aed-Chr11 18490424 18493100 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed11g1384 29 273 G2-like Transcription Factor Family AT4G37180 45.956 6.09e-55 180
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Aed11g1384 Myb_DNA-binding 8.4e-07 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed11g1384 - - gmx:100785723 541.191
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed6g0859 6 8522935 8526296 Aed11g1384 11 18490424 18493100 PCT