Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed11g1352 ATGGAAGTGCTTCCTTGTTCTGGTGTTCAATATGCCGGGGAATCTGATTGTCCTCAGCAGAGTTCAGGAACAGCATTTGTATACCAGGAACAACCTAATTGCCCCGAAAATGGTCAACAAGTCAACTTTGTAGCTGCACAACTGAATGAATCATCACATAAGATGCAAGGGTCTAAGATAGAAAGACAAGGTGATTTGTCAACTAATTCAGATTGCCAAGGCATTGGAGCTTCATGTTGTGACTGTCAAGTGGATGACCAACATGAATATTGTGGTTTTCATGATTTTGAGGAAGACGTGATAAATGAACCTTGCTTGACATCTGAGAACTCTATCTCTGTTGTGGATACAATTGAAAGTGAATCACCAAACAACAGTAGGGAAGGAGACTTGTCATGCTCTGAACCCAAGTGGCTAGAGGGAGATGAATCTGTGGCATTGTGGGTCAAGTGGAGAGGGAAGTGGCAAGCTGGTATCCGGTGTGCAAGGGCTGACTGGCCGTTATCAACTTTGAAAGCAAAACCAACTCATGACAGAAAGAAATATTTTGTTATATTTTTTCCCCACACAAGGATTTATTCTTGGGCGGACATGCTGCTTGTTAGATCAATTAATGAGTATCCCCATCCTATAGCATATAAGACTCATCAGAGCATACTGCAGCACCATATAAATGCTGACTGGTTACAGCATTCTTATCCCTCTTGGGCTGAAAGATGTCAGAATGCAAATAGCGCTGAATCAGTAGAGCTGCTGAAGGAGGAATTGTTTGAATCTATTGCGTGGAATGGGGTCAATACTCTCTGCCATGTTGTTCCACCAATGCAACAAACATTAGGTTCTGAATGGAAAACCTGGAAGCAGGATGTAATGAAATGGTTTTCTACACCACCTTCCTTATCGAGTGGTAAAGACACCCGACAACAAAGTTCTGATGATTTGTACCAAGCAAATCTTCAGGTTTGTAGAAAAAGGCCCAAACTTGAAGTTCGTCGTGCTGATACACATGCTTCACAATTGGAAATCAAGGACCAAACTATTGCCCTTGAGGCTGACCCTGCTGGCTTCTTTAAGAATCAGGACACGTTGAGCACTTTAGCAGCTGAGTCTTGCAAACAGGGAGGTGTTAGGGAGGTGTCTATGGCAACTACTTCTTCACCTAGTAATTTGACCAATAAATGGAATGAAATTGTAGTTGAGGCTACCGATTCCGATTTCTTACATACCAAAGAAATGGAAGCAACACCTACAAATGAATTGACTGTTGCAAAATCTGTAGATCCTGGTAGTAAGAATCGACAATGTACAGCTTATATTGAAGCAAAGGGAAGACAGTGTGTGAGATGGGCAAATGAGGGTGATGTATACTGTTGTGTACATTTGTCCTCTCGATTTTTGGGCAGCTCAACAAAATCTGAAAAGCCTGTTCCAGTTGATACTCCAATGTGTGAAGGTACAACTGTTCTGGGTACTAGATGTAAGCATCGTGCCCTACCTAGCTCTTTATTCTGTAAGAAACACCGGCCACATGCTGAAACAGAGCACACAATCTCAAATTTAACCCAGAATACGCTGAAGAGGAAGCATGAAGAAAATTATACTGGTTCAGAGGACATGTTTGGCAAAGACTTGGTATTGGTAAATATTGAAAGTCCACTACAAGTGGATCCAGTGTCATCCATTGGTGGTGATTCTGTACATGGAGAAAGCAACTTTAATGCCATGGAGTCAATGCACTGTATAGGTTCTCCTCCCTATGATAACATGAATCCTTGTAGGGAAGGTCCTAAAAGGTATTGCTTGTACTGTGAAAAACACCTTCCAAGCTGGCTTAAGCGTGCAAGAAATGGGAAGAGTAGAATAGTATCAAAAGAAGTGTTCACAGAACTTTTGAAGGACTGCAGCTCATGGGAGCAGAAGGTACATCTGCATAAAGCATGTGAACTTTTTTACAGGCTATTCAAAAGCATTTTATCATTAAGAAACCCTGTTCCCAAGGATGTCCAATTCCAGTGGGCTTTGACTGAAGCCTCTAAAGATTCCAATGTAGGCGAGTTTTTCACAAAGTTAGTTCATAGTGAAAAGGTGAGAATCAAGTCAATATGGGGATTCAATGATGACATGGATATATCCTGTGTCTTGGAAGAACCACCTCTCTTGCCATCCACAAATAATGACAACTATGAAGAGGAAAATGCCATCAAGTGTAAGTTATGCTCTGCAGAATTTCCTGATGACCAAGCACTTGGTAACCATTGGATGGACAGTCATAAAAAGGAAGCACAGTGGCTGTTTAGAGGCTATGCGTGTGCCATCTGTCTGGATTCATTTACCAACAAAAAACTATTGGAAACTCATGTTCAGGAGAGACATCATGTGCAATTTGTTGAACAATGCATGCTTCTCCAATGCATTCCTTGTGGGAGTCATTTTGGAAATATTGAACAATTATGGCAGCATGTTTTATCAGTTCACCCTGTTGATTTTAAACCATCAAAAGCTCCTGAGCAGCAAACTTTCTCTACCGGTGAAGATTCTCCAGTAAAACATGTTCAGGGAAATTCAGCCCCCTTGGAGAATAATTCTGAGAATACAGGTAGTTTACGGAAATTTGTTTGCAGGTTTTGTGGGTTGAAATTTGATTTACTACCTGACCTAGGTCGACATCACCAAGCTGCTCATATGGGGCCAAATCTGGCTAGCAGTCGCCCTGCAAAGAAGGGAGTTCGCTATTATGCATATAGATTGAAATCTGGCAGACTTAGCCGCCCTAGATTTAAAAAAAGTTTGGCAGCAGCATCATACAGGCTTAGAAATAAGGCTACTAATTTGAAGCGAGGCATTAAGGCAACAAACTCACTTGGCACAGGAGGAATAACCATACAACCTCATGTTACTGAAAGTGAAACAACAAATATTGGTAGATTGGCAGAACATCAATGCTTAGCTGTTTCAAAGATTTTGTTTTCAGAGATTCAGAAAACGAAACCTCGGCCCAACAATCTTGATATTTTATCAATTTCTCGCTCCGCTTGCTGCAAAGTTAGTCTCATAGCCTCACTGGAGGAGAAATATGGAATTTTGCCTGAAAAGCTCTATTTGAAGGCAGCAAAACTTTGCAGTGAGCATGATATTTTGGTAAATTGGCACCAGGAGGGGTTTATTTGTCCTAGAGGTTGTAATGTATCAAAGGATCAAGCTTTTCTCTCTCCTTTAGCATCTGTTCCTAATAGTTCTGTAATGCCCAAATCTGTGAATTTATGTGATCCTGCAAGTGATGAGTGGGACGTGGATGAATTTCACTGCATCATCAATTTGCGTACTTTAAAATTAGGTTCACTACAAAAAGCTGTTATCTTGTGCAATGACATTAGCTTTGGGAAGGAATCAGTTCCAGTGGTTTGTGTAGTAGATCAAGAACTTACACCTTCTCTTCATATGAATGGGCTGTGTAATGGACAAAATATAAGCTCTTCTATGCCTTGGGAGACCTTTACCTATGTTACAAAACCAATGCTTGATCAATCCCTTGGTCTTGATTCAGAGAGTGTGCAATTGGGATGTGCCTGCTCATACACTACCTGCTGTCCTGAAACTTGTGATCATGTATACCTTTTTGGCAATGACTATGATGATGCAAAAGACATATTTGGGAAACCAATGCGTGGCAGGTTCCCATATGATGAGAATGGTCGAATAATCTTGGAGGAAGGTTATCTTGTCTATGAGTGTAGTCATATGTGCAGATGCAATAAATCCTGTCCAAACAGAGTATTGCAGAATGGAGTACGAGTCAAATTGGAAGTCTTTAAAACAGAGAAAAAGGGATGGGCAGTAAGGGCCGGTGAAGCTATTCTACGTGGCACATTTGTGTGTGAATACATTGGAGAAGTTTTAGATGTGCAGGAGGCACGCGATAGGCGCAAGAGATATGGCACAGAGCATTGCAGTTATTTCTACGACATCGATACTCGTGTTAATGATATGAGCAGATTGATTGAAGGACAAGCTCAATATGTAATTGATGCTACTAAGTTTGGAAATGTCTCAAGATTCATCAATCATAGCTGCTCACCAAATCTTGTCAATCACCAAGTTCTTGTAGAGAGCATGGATTGTGAACGTGCACATATTGGTTTTTATGCAAGTCAGGATATTGCTTTGGGTGAAGAACTAACATATGACTATCAGTACGAGCTTATGCCTGGAGAAGGAACTCCTTGTCTTTGTGAATCCTTGAAGTGTAGGGGACGCCTTTATTAG 4263 0.4105 MEVLPCSGVQYAGESDCPQQSSGTAFVYQEQPNCPENGQQVNFVAAQLNESSHKMQGSKIERQGDLSTNSDCQGIGASCCDCQVDDQHEYCGFHDFEEDVINEPCLTSENSISVVDTIESESPNNSREGDLSCSEPKWLEGDESVALWVKWRGKWQAGIRCARADWPLSTLKAKPTHDRKKYFVIFFPHTRIYSWADMLLVRSINEYPHPIAYKTHQSILQHHINADWLQHSYPSWAERCQNANSAESVELLKEELFESIAWNGVNTLCHVVPPMQQTLGSEWKTWKQDVMKWFSTPPSLSSGKDTRQQSSDDLYQANLQVCRKRPKLEVRRADTHASQLEIKDQTIALEADPAGFFKNQDTLSTLAAESCKQGGVREVSMATTSSPSNLTNKWNEIVVEATDSDFLHTKEMEATPTNELTVAKSVDPGSKNRQCTAYIEAKGRQCVRWANEGDVYCCVHLSSRFLGSSTKSEKPVPVDTPMCEGTTVLGTRCKHRALPSSLFCKKHRPHAETEHTISNLTQNTLKRKHEENYTGSEDMFGKDLVLVNIESPLQVDPVSSIGGDSVHGESNFNAMESMHCIGSPPYDNMNPCREGPKRYCLYCEKHLPSWLKRARNGKSRIVSKEVFTELLKDCSSWEQKVHLHKACELFYRLFKSILSLRNPVPKDVQFQWALTEASKDSNVGEFFTKLVHSEKVRIKSIWGFNDDMDISCVLEEPPLLPSTNNDNYEEENAIKCKLCSAEFPDDQALGNHWMDSHKKEAQWLFRGYACAICLDSFTNKKLLETHVQERHHVQFVEQCMLLQCIPCGSHFGNIEQLWQHVLSVHPVDFKPSKAPEQQTFSTGEDSPVKHVQGNSAPLENNSENTGSLRKFVCRFCGLKFDLLPDLGRHHQAAHMGPNLASSRPAKKGVRYYAYRLKSGRLSRPRFKKSLAAASYRLRNKATNLKRGIKATNSLGTGGITIQPHVTESETTNIGRLAEHQCLAVSKILFSEIQKTKPRPNNLDILSISRSACCKVSLIASLEEKYGILPEKLYLKAAKLCSEHDILVNWHQEGFICPRGCNVSKDQAFLSPLASVPNSSVMPKSVNLCDPASDEWDVDEFHCIINLRTLKLGSLQKAVILCNDISFGKESVPVVCVVDQELTPSLHMNGLCNGQNISSSMPWETFTYVTKPMLDQSLGLDSESVQLGCACSYTTCCPETCDHVYLFGNDYDDAKDIFGKPMRGRFPYDENGRIILEEGYLVYECSHMCRCNKSCPNRVLQNGVRVKLEVFKTEKKGWAVRAGEAILRGTFVCEYIGEVLDVQEARDRRKRYGTEHCSYFYDIDTRVNDMSRLIEGQAQYVIDATKFGNVSRFINHSCSPNLVNHQVLVESMDCERAHIGFYASQDIALGEELTYDYQYELMPGEGTPCLCESLKCRGRLY 1420
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed11g1352 1420 MobiDBLite consensus disorder prediction 833 862 - -
Aed11g1352 1420 ProSitePatterns Zinc finger C2H2 type domain signature. 804 825 IPR013087 -
Aed11g1352 1420 ProSitePatterns Zinc finger C2H2 type domain signature. 736 757 IPR013087 -
Aed11g1352 1420 Pfam Zinc finger C2H2-type, 3 repeats 770 895 IPR040689 -
Aed11g1352 1420 ProSiteProfiles Pre-SET domain profile. 1186 1262 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Aed11g1352 1420 ProSiteProfiles Post-SET domain profile. 1404 1420 IPR003616 -
Aed11g1352 1420 SMART set_7 1265 1403 IPR001214 GO:0005515
Aed11g1352 1420 ProSiteProfiles SET domain profile. 1265 1397 IPR001214 GO:0005515
Aed11g1352 1420 ProSiteProfiles Zinc finger C2H2 type domain profile. 768 791 IPR013087 -
Aed11g1352 1420 ProSiteProfiles Zinc finger C2H2 type domain profile. 871 899 IPR013087 -
Aed11g1352 1420 Pfam Pre-SET motif 1124 1257 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Aed11g1352 1420 Pfam SET domain 1276 1396 IPR001214 GO:0005515
Aed11g1352 1420 SMART preset_2 1121 1249 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Aed11g1352 1420 Gene3D Classic Zinc Finger 721 794 - -
Aed11g1352 1420 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SUVR5 216 1420 - -
Aed11g1352 1420 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SUVR5 1 217 - -
Aed11g1352 1420 MobiDBLite consensus disorder prediction 834 862 - -
Aed11g1352 1420 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SUVR5 216 1420 - -
Aed11g1352 1420 ProSitePatterns Zinc finger C2H2 type domain signature. 873 894 IPR013087 -
Aed11g1352 1420 SUPERFAMILY SET domain 1113 1410 IPR046341 -
Aed11g1352 1420 Gene3D SET domain 1103 1401 IPR046341 -
Aed11g1352 1420 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SUVR5 1 217 - -
Aed11g1352 1420 SMART c2h2final6 802 825 IPR013087 -
Aed11g1352 1420 SMART c2h2final6 768 791 IPR013087 -
Aed11g1352 1420 SMART c2h2final6 734 757 IPR013087 -
Aed11g1352 1420 SMART c2h2final6 871 894 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed11g1352 Aed-Chr11 18307744 18318607 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed11g1352 95 221 C2H2 Transcription Factor Family AT2G23740 61.194 1.78e-41 165
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Aed11g1352 Pre-SET 3.1e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed11g1352 - - gmx:100776704 2301.94
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed11g1352 11 18307744 18318607 Aed11g1352 11 18307744 18318607 ECH