Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed11g1349 ATGGGTTGGTTTACCAAGTTGCTTAAGGGCTCTGATCATAAAATTTTACGAGGACAATACCATGGCAAATATGGAGAGGACAGAATTTGGGATAACCATCATACTTCAATGGATGATTTAACAGATATTGAGAAAGAAGACATTGACCGTGCAATTGCACTTTCTCTGTCAGAGGAGGATCATAAAGGGAACAAAGTTGTTGATTACGACTCGCAATCTGAAGATGAGGAACTTTGTAAAATTGATGATGAGGAAGATGAACATCTTGCTAAAATTCGACAAGAAGATGAACGTCTTGCTAAAATTCAGCAAGAAGATGAAGAACGTCTTGCAAAAATTCGACAAGAAGATGAACGTCTTGCTAAAATTCAGCAAGAAGAAGAAGAACGTCTTGCTAAAATTCAACAAGAAGATGAACGTCTTGCTAAAATTCAACAAGAAGATGAACGTCTTGCTAAAGCTCAACTTGACGAAGATGAGCAACTTGCTAGGGCAATTCAAGAAAGCTTGAGCATTGGTTCTCCTCCTCGATATGACAATGATTCTTCAACTGTATCTTTTCCTCACCTCTTTCCCCCTGGATACAGAATCTGTGCTGGATGCAAGACTGAGATTGGCCAAGGAAGATTTTTAAGTTGCATGGGAGGTGTCTGGCATCCAGAATGCTTCTGCTGCCATGCATGTCATCTGCCAATCACTGATTATGAGTTTTCCATGTCCAGCAATCGCCCTTTCCATAAATCATGCTATAGGGAGAAGCATCATCCAAGATGTGATGTTTGCAAGAACTTTATCCCAACTAATTCATCTGGCCTCATTGAGTATAGAGCTCATCCTTTCTGGCTACAAAAATACTGCCCATCACATGAACTTGATGGCACTCCTCGTTGTTGTAGCTGTGAAAGAATGGAGCCAAGGGATACAAAGTATCTTTTGCTTGATGATGGTCGTAAGCTATGTTTAGAGTGTCTAGACTCATCAATTATGGATACTCATGAATGCCAACCTCTTTACCTTGAAATACAAGAATTTTATGAAGGTTTAAATATGAAATTGGAGCAGCAAATTCCTATGCTCTTGGTTGAGAGACAAGCTCTGAATGAGGCTATGGAGGGAGAAAAGAATGGTCATCACCACTTACCTGAAACTAGAGGACTATGCCTGTCAGAAGAGCAAACTGTCACCACTATTTCAAGGAGGCCAAGGATTGGAGCAGGCTACCGAGCCATAGACATGATAACTGAACCTTATAGGCTGACCCGTCGTTGTGAAGTGACAGCCATTCTTGTTTTGTATGGCCTTCCTAGGTTGTTAACAGGATCAATCCTAGCTCATGAGATGATGCATGCATGGCTTAGGCTTAAAGGTTATCCTAACCTCAGTCCAGAAGTTGAAGAAGGAATCTGCCAAGTCTTGGCTCATATGTGGTTAGAATCAGAGCTCTATTCTGGATCTGGAAATGATGGTGCATCATCATCTGCATCATCTTCATCTTCATCATCACCTTCCTTGGCTTCTGCTTTATCAAAGAAGGGTAAACGGTCCAACTTTGAGAAGAAACTTGGTGATTTTTTTAAACACCAGATTGAGTCAGATACCTCCTCAGCTTATGGAGATGGATTCAGATTGGGTAACCAAGCAACACTCAAGTATGGGCTCAAAAGGACCCTTGATCATATACATATGACAGGAAGTTTTCCATATTGA 1707 0.4089 MGWFTKLLKGSDHKILRGQYHGKYGEDRIWDNHHTSMDDLTDIEKEDIDRAIALSLSEEDHKGNKVVDYDSQSEDEELCKIDDEEDEHLAKIRQEDERLAKIQQEDEERLAKIRQEDERLAKIQQEEEERLAKIQQEDERLAKIQQEDERLAKAQLDEDEQLARAIQESLSIGSPPRYDNDSSTVSFPHLFPPGYRICAGCKTEIGQGRFLSCMGGVWHPECFCCHACHLPITDYEFSMSSNRPFHKSCYREKHHPRCDVCKNFIPTNSSGLIEYRAHPFWLQKYCPSHELDGTPRCCSCERMEPRDTKYLLLDDGRKLCLECLDSSIMDTHECQPLYLEIQEFYEGLNMKLEQQIPMLLVERQALNEAMEGEKNGHHHLPETRGLCLSEEQTVTTISRRPRIGAGYRAIDMITEPYRLTRRCEVTAILVLYGLPRLLTGSILAHEMMHAWLRLKGYPNLSPEVEEGICQVLAHMWLESELYSGSGNDGASSSASSSSSSSPSLASALSKKGKRSNFEKKLGDFFKHQIESDTSSAYGDGFRLGNQATLKYGLKRTLDHIHMTGSFPY 568
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed11g1349 568 PANTHER PROTEIN DA1-RELATED 2 1 126 IPR045218 -
Aed11g1349 568 PANTHER PROTEIN DA1-RELATED 2 115 568 IPR045218 -
Aed11g1349 568 PANTHER TRANSCRIPTION FACTOR INTERACTOR AND REGULATOR LIM FAMILY-RELATED 1 126 - -
Aed11g1349 568 PANTHER TRANSCRIPTION FACTOR INTERACTOR AND REGULATOR LIM FAMILY-RELATED 115 568 - -
Aed11g1349 568 Coils Coil 85 105 - -
Aed11g1349 568 MobiDBLite consensus disorder prediction 487 506 - -
Aed11g1349 568 SMART lim_4 197 249 IPR001781 -
Aed11g1349 568 Pfam Protein DA1 347 563 IPR022087 -
Aed11g1349 568 CDD LIM_DA1 198 250 - -
Aed11g1349 568 Coils Coil 134 154 - -
Aed11g1349 568 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 225 281 - -
Aed11g1349 568 Pfam LIM domain 198 253 IPR001781 -
Aed11g1349 568 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 190 223 - -
Aed11g1349 568 ProSiteProfiles Ubiquitin-interacting motif (UIM) domain profile. 157 176 IPR003903 -
Aed11g1349 568 ProSiteProfiles LIM domain profile. 196 256 IPR001781 -
Aed11g1349 568 SMART uim 157 176 IPR003903 -
Aed11g1349 568 SMART uim 43 62 IPR003903 -
Aed11g1349 568 ProSitePatterns LIM zinc-binding domain signature. 198 232 IPR001781 -
Aed11g1349 568 Gene3D Cysteine Rich Protein 192 256 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed11g1349 Aed-Chr11 18269632 18276346 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Aed11g1349 DA1-like 4.1e-104 CL0126
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed11g1349 - - gmx:100778105 1052.74
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed11g1349 11 18269632 18276346 Aed11g1349 11 18269632 18276346 ECH
Aed11g1349 11 18269632 18276346 Aed7g0970 7 7418018 7424151 PCT