Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed11g1328 ATGAGTCATCGACCTTTCCAAGACCACATGATGCTCATGTCTCAGTTATTTCCTGCTGATGCATACACTCAAATTATTGCTCAACAAGGAGAGACGACTAAGAAGCCAAGACGCCGTCGTAACAAGAAGAACAAAGGAGGAGAAAACGGTGCGTCGGAAGCCAACAAGAAGAGGAAGCTTAGCTTGGAGCAAGTTCATTTGCTTGAACAAAACTTTGGAAATGAACACAAGCTTGAGTCCGAAAGAAAGGACAAGCTCGCAATGGAGCTTGGTTTGGACCCTCGACAAGTTGCTGTGTGGTTTCAAAACAGAAGAGCTCGTTGGAAGAACAAAAAGTTGGAAGAAGAGTACTCCACCCTGAAAAAATCTCACGATGCCACCTTGCTTGAGAAATGTCACCTGGAGAGTGAGGTGTTGAAGCTCAAAGAACAACTTTCCGAGGCAGAGAAAGAGATTCAGAGGCTGCTAGAGATCTGTGCAGCTGATAGAGTCCCAAGCAACAGTTCTAGTTCGTCACAGTCACAATCAATGGAAGCGGTGGACCCACCATTCTTTGGGGAATTTGGAGTTGATGAATATGATCAGGACGGTGTGTTTTACGTGCCTGAGACCCATTACATCAACGGCATGGAATGGATTAATCTGTATATGTAA 654 0.4495 MSHRPFQDHMMLMSQLFPADAYTQIIAQQGETTKKPRRRRNKKNKGGENGASEANKKRKLSLEQVHLLEQNFGNEHKLESERKDKLAMELGLDPRQVAVWFQNRRARWKNKKLEEEYSTLKKSHDATLLEKCHLESEVLKLKEQLSEAEKEIQRLLEICAADRVPSNSSSSSQSQSMEAVDPPFFGEFGVDEYDQDGVFYVPETHYINGMEWINLYM 217
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed11g1328 217 SMART HOX_1 54 115 IPR001356 GO:0003677
Aed11g1328 217 Coils Coil 138 158 - -
Aed11g1328 217 MobiDBLite consensus disorder prediction 45 60 - -
Aed11g1328 217 CDD homeodomain 56 112 IPR001356 GO:0003677
Aed11g1328 217 PRINTS Lambda-repressor HTH signature 91 107 IPR000047 GO:0003677
Aed11g1328 217 PRINTS Lambda-repressor HTH signature 82 91 IPR000047 GO:0003677
Aed11g1328 217 MobiDBLite consensus disorder prediction 28 60 - -
Aed11g1328 217 Coils Coil 103 130 - -
Aed11g1328 217 ProSitePatterns 'Homeobox' domain signature. 86 109 IPR017970 GO:0000981|GO:0006355
Aed11g1328 217 ProSiteProfiles 'Homeobox' domain profile. 51 111 IPR001356 GO:0003677
Aed11g1328 217 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-40-LIKE 7 216 - -
Aed11g1328 217 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 7 216 IPR045224 GO:0003700
Aed11g1328 217 SUPERFAMILY Homeodomain-like 55 120 IPR009057 -
Aed11g1328 217 Pfam Homeodomain 56 110 IPR001356 GO:0003677
Aed11g1328 217 Gene3D - 47 120 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed11g1328 Aed-Chr11 18115347 18117402 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed11g1328 1 217 Homeobox Transcription Factor Family AT4G36740 56.444 9.16e-73 218
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-other Aed11g1328 Homeodomain 1.5e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed11g1328 K09338 - gmx:100810736 367.466
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed11g1328 11 18115347 18117402 Aed11g1328 11 18115347 18117402 ECH
Aed11g1328 11 18115347 18117402 Aed7g0981 7 7531292 7532495 PCT