Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed11g1321 ATGCCGGCTGACTTGGACAATGTTTCCACAGCTTCAGGGGAAGCTAGCGTGTCTTCCTCTGGCAATCAGACAGTGCCCCCAAAACCCACAACTAAGAAAAAGCGAAACCTTCCTGGAATGCCAGATCCGGATGCAGAGGTGATTGCTCTGTCTCCGAAGACCCTGATGGCGACGAACCGGTTCGTGTGTGAAATTTGCAACAAGGGGTTTCAGAGGGACCAGAATCTTCAGCTGCATCGGAGGGGTCACAATCTTCCGTGGAAGCTGAGGCAGAGGTCGAGCAAGGAGGTGAGGAAGAGGGTTTACGTTTGTCCCGAACCAACGTGCGTTCACCACGATCCTTCTAGAGCGTTGGGGGATCTCACGGGGATTAAGAAGCACTTCTGTAGAAAACACGGCGAGAAGAAGTGGAAATGCGACAAGTGCTCTAAGAAATACGCAGTTCAATCCGATTGGAAGGCTCACTCCAAGATTTGCGGTACCCGAGAGTATAAATGCGATTGTGGCACTTTGTTCTCCAGGAGGGATAGCTTCATCACGCATAGGGCTTTTTGTGATGCGTTGGCGGAGGAAAGTGCGAGATCTCAGCCTCAGACTATTGCAAAGGCTAGTCCAGAGACAGATTCGAAGGCTGTGACCGCTGATTCATCGCCTCCGGCGGCGGAGGCGGTGGCGGCTCCGCCTCCGGCGCCACCTGCACCGCCTGTTAGTTCTCAGTCAAACAGTGCTGTTGTACCGTCGTCTGCTTTGCAGACACAAAATCAAGAGTTGCCTGAAAATTCCCCACAAATCATAGAAGAACCACAGGCCAATACTTCCATGAATGGGAGCTGTAGCAGCACCAGCACCACCAGCTCAACAAGCAACAGCAACAGTGGTGCTAGCAGCAGTGTATTTGCAAGCTTGTTTGCCTCATCATCAGCATCTGCAACCGCAAGCCTCCACTCTCAAACACCAGCATTCACTGACCTAATTATGTCCATGGGACATCCAAATCAGCCAGCAGACCTCTCAAGGCCTTCATCTTCAGAGCCCATTTCTCTGTGCCTTGCTACCGATCACGGGTCATCCATTTTTGGAACTGGAGGGCAGAAATGTCGTCAGTATGCTCTGCCGCCACCACAACCAGCCATGTCTGCCACTGCATTGCTGCAGAAAGCCGCCCAAATGGGTGCAGCAGCAACAAATGCCTCGTTTCTTCGTGGGTTAGGCATAGTCTCATCTTCTGCATCAACCTCATCAGGTCAGCAAGATAGTTTGCAATGGGGCCAGCAACCAGTGGAGCCAGAGAGTGCCTCAGTTCCTGCAGGTCTTGGACTGGGGCTTCCCTGCGACAGTAGCTCTGGACTAAAGGAGTTAATGATGGGGACTCCTTCCATGTTTGGTCCAAAGCAGACAACCCTTGATTTTCTTGGATTGGGGATGGCTGCTGGGGGCACTCCTGGTGGAGGCTTATCGGCACTCATCACCTCCATTGGTGGTGGTCTGGATGTTACTGCTGCAGCGGCATCCTTTGCTAGTGGAGAATTCCCTGGCAACGATATTGGGAGGGGAGGCACTTGA 1563 0.5259 MPADLDNVSTASGEASVSSSGNQTVPPKPTTKKKRNLPGMPDPDAEVIALSPKTLMATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLRQRSSKEVRKRVYVCPEPTCVHHDPSRALGDLTGIKKHFCRKHGEKKWKCDKCSKKYAVQSDWKAHSKICGTREYKCDCGTLFSRRDSFITHRAFCDALAEESARSQPQTIAKASPETDSKAVTADSSPPAAEAVAAPPPAPPAPPVSSQSNSAVVPSSALQTQNQELPENSPQIIEEPQANTSMNGSCSSTSTTSSTSNSNSGASSSVFASLFASSSASATASLHSQTPAFTDLIMSMGHPNQPADLSRPSSSEPISLCLATDHGSSIFGTGGQKCRQYALPPPQPAMSATALLQKAAQMGAAATNASFLRGLGIVSSSASTSSGQQDSLQWGQQPVEPESASVPAGLGLGLPCDSSSGLKELMMGTPSMFGPKQTTLDFLGLGMAAGGTPGGGLSALITSIGGGLDVTAAAASFASGEFPGNDIGRGGT 520
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed11g1321 520 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 1 517 - -
Aed11g1321 520 SUPERFAMILY beta-beta-alpha zinc fingers 60 157 IPR036236 -
Aed11g1321 520 MobiDBLite consensus disorder prediction 413 438 - -
Aed11g1321 520 MobiDBLite consensus disorder prediction 222 236 - -
Aed11g1321 520 MobiDBLite consensus disorder prediction 1 43 - -
Aed11g1321 520 ProSiteProfiles Zinc finger C2H2 type domain profile. 61 83 IPR013087 -
Aed11g1321 520 Gene3D Classic Zinc Finger 41 107 - -
Aed11g1321 520 Gene3D Classic Zinc Finger 115 195 - -
Aed11g1321 520 PANTHER PROTEIN INDETERMINATE-DOMAIN 2-LIKE 1 517 - -
Aed11g1321 520 MobiDBLite consensus disorder prediction 194 293 - -
Aed11g1321 520 ProSitePatterns Zinc finger C2H2 type domain signature. 63 83 IPR013087 -
Aed11g1321 520 MobiDBLite consensus disorder prediction 194 214 - -
Aed11g1321 520 SMART c2h2final6 61 83 IPR013087 -
Aed11g1321 520 SMART c2h2final6 102 132 IPR013087 -
Aed11g1321 520 SMART c2h2final6 137 157 IPR013087 -
Aed11g1321 520 MobiDBLite consensus disorder prediction 237 293 - -
Aed11g1321 520 MobiDBLite consensus disorder prediction 9 30 - -
Aed11g1321 520 MobiDBLite consensus disorder prediction 413 428 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed11g1321 Aed-Chr11 18078242 18082339 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed11g1321 1 517 IDZ Gene Family AT5G66730 59.404 0.0 547
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Aed11g1321 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed11g1321 K25869 - gmx:100806404 808.905
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed11g1321 11 18078242 18082339 Aed11g1321 11 18078242 18082339 ECH
Aed11g1321 11 18078242 18082339 Aed7g0989 7 7593465 7596997 PCT