Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed11g1304 ATGGAGGCGAAGAACAAAGTGAATAACGAGGATCCTGCAGCGGAGTCTCCAACTTCGGTTCTCGAAGACGAGGATGTCTGTGCCACGAAAGAGGAAGTTAAGTCGGAGGAAGAGATGATTGCAGACTTTCAAGATGATGGGTCCTCTCTTGTATCGAAAACAATGTTGGAGGAGGAAGAAAAGTTAATTGAAGTTAGGATGAAGGAAGAGGAGGTGCAGTGTGAGGAGGCAGCTGACCTTAATGACACACAGTTTAACAAATTGGATGAGCTTTTGACTCAAACCAAACTGTACTCTGAGTTTCTGCTGGAGAAAATGGATGACATCACACTGGCTGTGGGTGAACAAGAGAAAGGGGAAGAGCAAGAGAGAAATCCTTCTCCAAAGAAGAAGGGCCGTGGATCAAAAAGAAAAGCTGCTTCCCAGTGCAATACCAGGAAAGCCAAAAAGGCAGTAGCTGCCATGCTGACAAGATCTAAAGAAAGTGAGAAGACTGAAGATACGAACATGACTGAGGAAGAAAGAGTTGAGAAAGGGCAGAAAGAGCTCATGCCTTTACTGACAGGTGGAAAATTGAAGCCTTATCAACTGAAGGGTGTAAAGTGGTTGATTTCCTTGTGGCAAAATGGATTGAATGGGATTCTTGCTGATCAGATGGGTCTTGGGAAGACAATCCAAACCATTGGATTTCTCTCACATCTAAAAGCGAAAGGTCTGGACGGGCCATACATGATAATTGCTCCTCTATCTACTCTCTCAAACTGGGTGAACGAGATTTCTAGGTTTGCACCATCACTCCCTTGCGTTATCTACCATGGTGACAAGAAACAGAGAGATGAGATCCGAAGGAAACAAATGCCTACTAAAACAATTGGCCCGGAATTTCCCATTGTCATAACTTCTTATGAGGTTGCTTTAAATGATGCTAAGAAATATTTTAGGTCATACAATTGGAAGTATCTTGTTGTTGACGAGGGACACAGGCTCAAAAACTCACAGTGCAAATTAGTAAAGGAATTGAAATACATAAAGGTTGAAAACAAGCTTCTTCTAACTGGAACGCCTCTTCAAAATAACTTGGCTGAACTATGGTCTCTGTTGAACTTCATTTTGCCTGATATTTTTTCATCCCTTGAAGAATTTCAGTCATGGTTTAATCTGTCAGTGAAGGGCAACAATGGAGCAACCAAGGAAGAGCTGGAAGAGAAACGAAGAGCCCAAGTAGTAACAAAGCTTCATGCCATTCTCCGACCTTTTCTTTTGCGTAGGATGAAGTCTGATGTTGAGATTATGTTGCCACGGAAAAAGGAGATTATTATCTATGCAAACATGACTGATCATCAGAAGAAATTGCAGGATCATTTAGTTAATAAGACGTTGGGGAACTACTTAAAAGAAAACATGTCAAGTGGATGTTCTGCTCCTGCAAGTATAGTTCGTAATTTAGCTATTCAACTTAGGAAGGTGTGTAACCATCCTGATCTCCTAGATTCAGCCTTTGATGGTACATGTATGTATCCTCCTGTAAATGAGATTATTGAACAATGTGGAAAATTCCGTTTGCTTGATCGATTGCTGCAACATTTATTTGTGAGGAATCACAAAGTCCTTATCTTCAGTCAATGGACTAAAGTGATAGATATAATGGATTATTATTTTAGTGAAAAAGGCTTTGAAGTTTGCAGGATTGATGGTTCTGTGAAACTGGATGAGAGGAAACAACAGATCCAGGACTTCAATGATGAAAATAGCAATTGCAGAGTTTTTCTTCTTTCTACTAGGGCTGGTGGATTGGGAATTAACCTCACTGCAGCTGATACTTGCATTCTTTATGACAGTGACTGGAATCCTCAGATGGATTTACAAGCCATGGATAGATGTCATAGAATTGGCCAAACCAAACCTGTTCATGTTTATAGACTCTCAACTGCTCATTCTATAGAGGGTCGCATGTTGAAAAGAGCTTTCAGCAAATTGAAGCTTGAACAGGTAGTGATTGAGAAAGGACAGTTTCATCAAGAACGTACAAAACCTGCCAGTATGGATGAAATAGAGGAAGATGATGTTTTGGCATTGCTACGTGAAGAAGAAACAGCTGAAGATAAAATGATACATACAGATATTAGTGATGAAGACCTGGAGAAGCTCTTGGATCGCAGCGATCTTACTGTCAATAACTCAGACGATGATAAATTGAAAGCAGCTCCAGTTAGTCCGTTTCCTCTTAAAGGGCCAGGGTGGGAGGTGGTGGTTCCAACTTCGACTGGGGGCATGCTCTCTACCCTTAACAGCTAG 2295 0.4113 MEAKNKVNNEDPAAESPTSVLEDEDVCATKEEVKSEEEMIADFQDDGSSLVSKTMLEEEEKLIEVRMKEEEVQCEEAADLNDTQFNKLDELLTQTKLYSEFLLEKMDDITLAVGEQEKGEEQERNPSPKKKGRGSKRKAASQCNTRKAKKAVAAMLTRSKESEKTEDTNMTEEERVEKGQKELMPLLTGGKLKPYQLKGVKWLISLWQNGLNGILADQMGLGKTIQTIGFLSHLKAKGLDGPYMIIAPLSTLSNWVNEISRFAPSLPCVIYHGDKKQRDEIRRKQMPTKTIGPEFPIVITSYEVALNDAKKYFRSYNWKYLVVDEGHRLKNSQCKLVKELKYIKVENKLLLTGTPLQNNLAELWSLLNFILPDIFSSLEEFQSWFNLSVKGNNGATKEELEEKRRAQVVTKLHAILRPFLLRRMKSDVEIMLPRKKEIIIYANMTDHQKKLQDHLVNKTLGNYLKENMSSGCSAPASIVRNLAIQLRKVCNHPDLLDSAFDGTCMYPPVNEIIEQCGKFRLLDRLLQHLFVRNHKVLIFSQWTKVIDIMDYYFSEKGFEVCRIDGSVKLDERKQQIQDFNDENSNCRVFLLSTRAGGLGINLTAADTCILYDSDWNPQMDLQAMDRCHRIGQTKPVHVYRLSTAHSIEGRMLKRAFSKLKLEQVVIEKGQFHQERTKPASMDEIEEDDVLALLREEETAEDKMIHTDISDEDLEKLLDRSDLTVNNSDDDKLKAAPVSPFPLKGPGWEVVVPTSTGGMLSTLNS 764
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed11g1304 764 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 425 716 IPR027417 -
Aed11g1304 764 MobiDBLite consensus disorder prediction 114 129 - -
Aed11g1304 764 MobiDBLite consensus disorder prediction 114 178 - -
Aed11g1304 764 Pfam SNF2-related domain 195 495 IPR000330 GO:0005524|GO:0140658
Aed11g1304 764 SMART ultradead3 188 381 IPR014001 -
Aed11g1304 764 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 521 667 IPR001650 -
Aed11g1304 764 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 169 423 IPR027417 -
Aed11g1304 764 Gene3D - 429 734 IPR027417 -
Aed11g1304 764 PANTHER SNF2/RAD54 HELICASE FAMILY 8 763 - -
Aed11g1304 764 Pfam Helicase conserved C-terminal domain 520 631 IPR001650 -
Aed11g1304 764 SMART helicmild6 547 631 IPR001650 -
Aed11g1304 764 CDD SF2_C_SNF 507 641 - -
Aed11g1304 764 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 204 373 IPR014001 -
Aed11g1304 764 MobiDBLite consensus disorder prediction 1 26 - -
Aed11g1304 764 MobiDBLite consensus disorder prediction 130 144 - -
Aed11g1304 764 PANTHER BNAC07G16550D PROTEIN 8 763 - -
Aed11g1304 764 MobiDBLite consensus disorder prediction 154 178 - -
Aed11g1304 764 Gene3D - 156 422 IPR038718 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed11g1304 Aed-Chr11 17984452 17990092 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed11g1304 178 652 RAD5 or RAD16-like Gene Family AT3G16600 24.055 2.60e-32 131
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Aed11g1304 SNF2_N 5.7e-65 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed11g1304 K19001 - gmx:100777687 1352.81
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed11g1304 11 17984452 17990092 Aed11g1304 11 17984452 17990092 ECH