Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed11g1292 ATGCATCACTGTTGCAGTGGTTCACAGGGGCACGTGATGGGACCCTGCACATGTGGTGTCTTTCACACCACCCAAGCCAGCTCCTTCTCCATGCTCTTCTCCATGCCCAACCACAAACCAGTACCTTACGACGATTCCGACATCTATGACTACAATCATAATAATAATAATTCCTCTTCCTCTTCCATTGACTGCACCCTCTCCCTCGGAACCCCCTCCACCCGTTTGTCCGAAGACGAAGAAAAACGAACCCGCCACGAGCGCCGTTCCGTCTCTAACTTCTGCTGGGACTTACTACAATCCAAACACAACCCTCAATCCCATTCCCATACCAAGTCCTCCTCCCGAACCACTTCCTCCACCGATCCTCTCCTCGCTCGCCGCTGCGCCAATTGTGACACCACTTCAACCCCCCTCTGGAGAAATGGCCCCCGTGGCCCCAAGTCGCTGTGCAATGCGTGTGGGATTAGATTCAAGAAGGAGGAGAGAAGAGCGAGTGCGGCCGCAGCCGCGCCGGCAGGGGCTTCCGGCGGCTTGATGGAACCGGCGCAGGTGTACAACAACTCATCATGGTACGCACACCAGCAGAGTCAGAAGATGCAGTGCTTCTCGCCGGGGATGGGGAACGAGTTCCGTTTCGTGGATGACGCCGATCGAGACGCCGATAACGCCATTCCGTTTCTCTCGTGGAGACTCAACGTCACGGACAGAACCAGCCTCGTTCACGACTTCACCAGATGA 741 0.5587 MHHCCSGSQGHVMGPCTCGVFHTTQASSFSMLFSMPNHKPVPYDDSDIYDYNHNNNNSSSSSIDCTLSLGTPSTRLSEDEEKRTRHERRSVSNFCWDLLQSKHNPQSHSHTKSSSRTTSSTDPLLARRCANCDTTSTPLWRNGPRGPKSLCNACGIRFKKEERRASAAAAAPAGASGGLMEPAQVYNNSSWYAHQQSQKMQCFSPGMGNEFRFVDDADRDADNAIPFLSWRLNVTDRTSLVHDFTR 246
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed11g1292 246 MobiDBLite consensus disorder prediction 103 122 - -
Aed11g1292 246 PANTHER GATA TRANSCRIPTION FACTOR 18 1 245 IPR044272 GO:0003700|GO:0009908
Aed11g1292 246 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 126 164 - -
Aed11g1292 246 ProSiteProfiles GATA-type zinc finger domain profile. 123 159 IPR000679 GO:0006355|GO:0043565
Aed11g1292 246 ProSitePatterns GATA-type zinc finger domain. 129 154 IPR000679 GO:0006355|GO:0043565
Aed11g1292 246 CDD ZnF_GATA 128 160 IPR000679 GO:0006355|GO:0043565
Aed11g1292 246 SMART GATA_3 123 175 IPR000679 GO:0006355|GO:0043565
Aed11g1292 246 MobiDBLite consensus disorder prediction 59 74 - -
Aed11g1292 246 Pfam GATA zinc finger 129 163 IPR000679 GO:0006355|GO:0043565
Aed11g1292 246 MobiDBLite consensus disorder prediction 59 85 - -
Aed11g1292 246 Gene3D - 125 200 IPR013088 GO:0006355|GO:0008270
Aed11g1292 246 PANTHER GATA TRANSCRIPTION FACTOR 18 1 245 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed11g1292 Aed-Chr11 17911325 17913193 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed11g1292 17 246 C2C2-Gata Transcription Factor Family AT3G50870 41.724 1.93e-60 191
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Aed11g1292 GATA 5.9e-18 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed11g1292 - - gmx:100790571 377.481
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed11g1292 11 17911325 17913193 Aed11g1292 11 17911325 17913193 ECH
Aed11g1292 11 17911325 17913193 Aed7g1004 7 7732347 7733199 PCT