Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed11g1287 ATGTGTAGGTCTGGGACACTCCTAATGAGAACTGATATTGGTGAAGGGGAGGGGTTACAAAATCCCCGCTCCTTTAAGGTGCATAGTAAAATCTGCATAGAACTCACAGAATTAGTGGATAGAATCTCAAGAATAGTTCCAGACATAGAGGCGGCACGGCCAGGATTCTCATCTGGAATACAGTCTCTGTGTTTGCTCAATAATGCAATTGAGAAATCCAAACTACTTCTACAACATTGCTCTGAATGTAGCAAACTCTACCTGGCTATGACAGGGGATACGATACTCTCAAGATGCCTAAAGTTAACAAGATCATTAGAGAAAAACTTAATCCAAATTCAGGAAATTGTTCCCGTTCAGTTGGCTGTAAAGGTTTCTAAAATAATTAATGATCTTGAGTGTACGAGGTTTGTTCTGGACCCTGTTGAAGAAGAGACAGGGAGGGTTGTGAGAGAGTTGCTTACTTTAACCTTAGATTCAGTTGATGATTCTGAAGTGAAAGCTCTTCAGTTTGTAGCATCTCGACTGAACATGACATCCCCAAAGGCCATCATTACAGAGCAACGATCTATGAGGAAGTTGCTAGAAAAACTTGGACCAAATGACCTCCCAAAGAAGAAGATACTGAAATATCTTCTGCATCTACTCAAAAAGCATGGAAAACTCATGGTGGGAGAGCATGTGGAGACGGTCTATTCTCGTTCTGAGGAACAATCTGCAACAGAGAACTCTAGTCACGATTCTCGAAGAAGCCATCATGTTGAGTCAGACCCAAGCATGAACTATGGTCAGTATAAAACTCACACCACTGAGTTAAGTGGAGTTGCACTCAGTGAGGAATATAAGTGCCCAATATCCTCAAGGTTGATGTATGATCCTGTTATCATTGGTTCAGGAGTAACATATGAAAGGATGTGGATAAAAAAGTGGTTTGATGATGGTAATGACACATGCCCCAGAACCGGAGAGAAACTAGTCAATATGGAATTAACTCCAAACATGGCCATGAAAGACTTAATATCAAAGTGGTGCAAATATAATGGAGTCTCCATTCCAGACCCTAGTAGGCATGCACAGGATATTCAAGCATGGGAAGCTTCAAGCACTTCCATTTGCAGTTTAGGAAGTTATTTCAATGATTTCACCTCGCCAGTCGATCTCAGTAACATGTCAATTGGGTCATTGGATACTAGTTTTAGTTCAGATGCTTCACATGGTAAGACCAATCGTGGCTCAAATTTGATGCTGACCAAGACGCGTGACAATTCTCAAAAACATAATCAAGCTCATACAGAGATACATGATACTGATTTGATGCTCTTGCCTCAACTCTCTGATCTTCAATGGGATTCTCAATGCAAGGTCATTCATGATCTGAAGGATCATCTGAAAAGCAATAGCCAAGCTTTTGTTTCTGTATCAGCCGAGAATTTCATTGAACCACTCGTCAGGTTTCTGAGCAATGCTTATAATCTGCGTGATGTTAAACCGCTGAGAGCTGGAACTCAGCTTCTGTTGGAAGATGGCAAGACTAATTTGAATGAAGAGACTTTCATCACGTTGGCAAGTTTTCTTGATTCAGAAGTGATAGAAGAAACTCTTGCCATAATGGAAGAACTTTCAGGATATGGGTTTAGTAAAGCTAAAATGGCAGCATCCAATGCTCTCAGTTCTATTCTAGACATACTTGATTCCGAAAACAAAGGTTTCCAACAACAAGCTATTAGAATAATGTACAATTTGTCCTTCAGTGGTGAAGTTTGTCCCCGCATGCTATCTCTCAGGTGCATCCCAAAATTGCTGCCATTTTTTAAAGACAGAACCCTTTTGAGATACTGCATGCACATATTGAAAAATCTCAGTGAGACTGAAAAGGGTAGGAACTGTGTTGCTGAAACAAAGGGATGCATATCTTGTGTTGCTGAAATACTTGAGTCAGGCAATACTGAGGAACAAGAACATGCACTGGCTGTTCTACTCTCTATATGCTCTCAAAATGTGGATTATTGTAAGTTAGTAATGCGTGTGGATGAGACTATCTTAACTTCTCTTATCTTTATCTCACAGAATGGAAATGATAAAGGAAAGGAAACTGCGTTGGAATTGTTCCATCTTTTGAAGGATGTTAACATTTCTGAGAATGAAACTTGTCCTGAGCCAAATATCAACAACTCTTTTCGAGATTCTAACAGTCACCCTGAAGAAAATAAGCCATCAAAGAGATCCACGTTTCTGAAGAAACTATCACCGTTCTCAAAAACCAAAAGATGA 2271 0.3998 MCRSGTLLMRTDIGEGEGLQNPRSFKVHSKICIELTELVDRISRIVPDIEAARPGFSSGIQSLCLLNNAIEKSKLLLQHCSECSKLYLAMTGDTILSRCLKLTRSLEKNLIQIQEIVPVQLAVKVSKIINDLECTRFVLDPVEEETGRVVRELLTLTLDSVDDSEVKALQFVASRLNMTSPKAIITEQRSMRKLLEKLGPNDLPKKKILKYLLHLLKKHGKLMVGEHVETVYSRSEEQSATENSSHDSRRSHHVESDPSMNYGQYKTHTTELSGVALSEEYKCPISSRLMYDPVIIGSGVTYERMWIKKWFDDGNDTCPRTGEKLVNMELTPNMAMKDLISKWCKYNGVSIPDPSRHAQDIQAWEASSTSICSLGSYFNDFTSPVDLSNMSIGSLDTSFSSDASHGKTNRGSNLMLTKTRDNSQKHNQAHTEIHDTDLMLLPQLSDLQWDSQCKVIHDLKDHLKSNSQAFVSVSAENFIEPLVRFLSNAYNLRDVKPLRAGTQLLLEDGKTNLNEETFITLASFLDSEVIEETLAIMEELSGYGFSKAKMAASNALSSILDILDSENKGFQQQAIRIMYNLSFSGEVCPRMLSLRCIPKLLPFFKDRTLLRYCMHILKNLSETEKGRNCVAETKGCISCVAEILESGNTEEQEHALAVLLSICSQNVDYCKLVMRVDETILTSLIFISQNGNDKGKETALELFHLLKDVNISENETCPEPNINNSFRDSNSHPEENKPSKRSTFLKKLSPFSKTKR 756
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed11g1287 756 SUPERFAMILY RING/U-box 272 353 - -
Aed11g1287 756 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 276 350 IPR013083 -
Aed11g1287 756 Pfam U-box domain 279 346 IPR003613 GO:0004842|GO:0016567
Aed11g1287 756 SUPERFAMILY ARM repeat 440 706 IPR016024 -
Aed11g1287 756 ProSiteProfiles U-box domain profile. 276 350 IPR003613 GO:0004842|GO:0016567
Aed11g1287 756 Pfam Kinesin-associated protein (KAP) 535 663 - -
Aed11g1287 756 PANTHER U BOX DOMAIN-CONTAINING 17 742 - -
Aed11g1287 756 MobiDBLite consensus disorder prediction 716 756 - -
Aed11g1287 756 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 17 742 - -
Aed11g1287 756 Gene3D - 439 715 IPR011989 -
Aed11g1287 756 MobiDBLite consensus disorder prediction 240 256 - -
Aed11g1287 756 MobiDBLite consensus disorder prediction 232 265 - -
Aed11g1287 756 CDD RING-Ubox_PUB 281 323 IPR045210 -
Aed11g1287 756 SMART Ubox_2 280 343 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed11g1287 Aed-Chr11 17873726 17877280 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed11g1287 9 715 U-box Gene Family AT4G36550 38.162 5.90e-145 440
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed11g1287 - - gmx:100791627 1214.13
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed11g1287 11 17873726 17877280 Aed11g1287 11 17873726 17877280 ECH
Aed11g1287 11 17873726 17877280 Aed7g1015 7 7806283 7811283 PCT