Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed11g1285 ATGTCGTTGAAAAGCATCGTAAGGGAACTAAAGGAGATGAGGGATGGGATTGGTAGCATGTCAAGGCGAGGTGTTGAGAGCAGGCGTTGGAACGGCCGGGCAAAGTCACATGTTGCTCCTGATATCACTCTAACTTCAGTTGAACCTATTCAGCAAGGGCAGTGGGCAAATTTACCGCCTGAATTGCTTCTGGACATAGTAAGGAGGGTTGAAGAGAGTGAGACTAGCTGGCCTTCACGTGTGGTTGTTCTTTATTGTGGTTCCGTTTGTAAATCGTGGAGGGCTGTTACAAAAGAGATTGTTAAGACTCCTGAACAATGTGGAAGGCTTACGTTTCCTATTTCACTGAAGCAGCCTGGTCCTCGTGATTCCCCAATACAGTGCTTTATCAGGAGGAACAGAGAAACTTCAACATATCTGTTGTACATTGGCCTGGTACCATCGGAGAACGAGACTGATAAGTTGTTATTAGCTGCCAAAAAGGTAAGAAGGGCAACAGGCACAGACTTCGTCATATCTTTGGTTGCAGATGATTTTTCTCGCTCCAGCAACACATATGTTGGGAAACTCAGGCAAGTTTTGTTCACTATATATGACAGCCAACCCCCACCAGGAACTGCAATTCAACCAGATAGTCGATCCAGTAGGAGATTTCATTCTAAGCAGGTATCTCCTAGAGTACCAGCATGTAACTATGTTGTTAGCACCATGTCCTATGAGTTGAATGTTCTCCGTGCGAGAGGGCCAAGGAGAATGCACTGCACCATGAACTCCATACCTGTCTCAGCTGTTCAGGAAGGAGGCAATGCTCCAACTCCTACATCTTTTCCTCAAATCATTGACGAGCCTTTTTCTCCCTCACCAGCACTGAAAGGAAAAGATCCAATTAGAGATTTAGACAATGCAAGCATCCCAGAGCTATCAGTACAGAGCCAAGGCTCAGCTGAGCATCTTGTACTTAAAAATAAGGCTCCTAGATGGCATGAGCAACTGCAATGCTGGTGCCTAAACTTCAAGGGCCGTGTTACAGTGGCTTCTGTTAAAAACTTTCAACTTGTGGCTGCTGTTGATCCATTTCATAATGTTTCTGCTGCAGAGCAAGAAAAGGTAATCTTGCAGTTTGGAAAGATTGGAAAAGACATATTTACCATGGATTACCGTTACCCGATCTCTGCCTTCCAAGCCTTTGCCATATGCCTGAGCAGCTTTGATACCAAACCAGCCTGTGAATGA 1233 0.4517 MSLKSIVRELKEMRDGIGSMSRRGVESRRWNGRAKSHVAPDITLTSVEPIQQGQWANLPPELLLDIVRRVEESETSWPSRVVVLYCGSVCKSWRAVTKEIVKTPEQCGRLTFPISLKQPGPRDSPIQCFIRRNRETSTYLLYIGLVPSENETDKLLLAAKKVRRATGTDFVISLVADDFSRSSNTYVGKLRQVLFTIYDSQPPPGTAIQPDSRSSRRFHSKQVSPRVPACNYVVSTMSYELNVLRARGPRRMHCTMNSIPVSAVQEGGNAPTPTSFPQIIDEPFSPSPALKGKDPIRDLDNASIPELSVQSQGSAEHLVLKNKAPRWHEQLQCWCLNFKGRVTVASVKNFQLVAAVDPFHNVSAAEQEKVILQFGKIGKDIFTMDYRYPISAFQAFAICLSSFDTKPACE 410
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed11g1285 410 PANTHER TUBBY-RELATED 1 410 - -
Aed11g1285 410 ProSitePatterns Tub family signature 1. 338 351 IPR018066 -
Aed11g1285 410 Pfam F-box domain 55 102 IPR001810 GO:0005515
Aed11g1285 410 Pfam Tub family 116 405 IPR000007 -
Aed11g1285 410 PANTHER TUBBY-LIKE F-BOX PROTEIN 1 410 - -
Aed11g1285 410 SUPERFAMILY F-box domain 50 99 IPR036047 GO:0005515
Aed11g1285 410 ProSitePatterns Tub family signature 2. 395 410 IPR018066 -
Aed11g1285 410 PRINTS Tubby superfamily signature 170 186 IPR000007 -
Aed11g1285 410 PRINTS Tubby superfamily signature 388 410 IPR000007 -
Aed11g1285 410 PRINTS Tubby superfamily signature 231 258 IPR000007 -
Aed11g1285 410 PRINTS Tubby superfamily signature 367 386 IPR000007 -
Aed11g1285 410 PRINTS Tubby superfamily signature 320 337 IPR000007 -
Aed11g1285 410 PRINTS Tubby superfamily signature 338 354 IPR000007 -
Aed11g1285 410 Gene3D - 48 103 - -
Aed11g1285 410 Gene3D Tubby Protein; Chain A 113 410 IPR025659 -
Aed11g1285 410 SUPERFAMILY Tubby C-terminal domain-like 104 410 IPR025659 -
Aed11g1285 410 MobiDBLite consensus disorder prediction 201 221 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed11g1285 Aed-Chr11 17869259 17871851 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed11g1285 1 410 TUB Transcription Factor Family AT2G18280 61.836 5.76e-178 499
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Aed11g1285 Tub 1.6e-98 CL0395
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed11g1285 K19600 - gmx:100798958 767.303
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed11g1285 11 17869259 17871851 Aed11g1285 11 17869259 17871851 ECH
Aed11g1285 11 17869259 17871851 Aed7g1017 7 7816096 7819672 PCT