Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed11g1279 ATGAATGATTTGATGACAAAGTCGTTCCTAAGTTATGCGGAACTAAAGCAGCAGGCTCGGAAGGACCTTGAAGACGATCTTGATCTTGAAGCAGGGAAACTCAACCCCACAGAAGACCGCAACCTCTCTCAGTTCTTCCAAGAAGTTGAAGCAATCAAGGTTGAAATGGAAGAAATCACCAATCTCTTAATTGATCTTCAGCAACTTAATGAAGAGACAAAGTGCACTCACAGTGCCAAAGTTCTTCGTGGCCTAAGGGACAGGATGGAGTCTGACATGGTTGCCGTGCTTCGCAAGGCACGGATTATCAAGGCAATGCTTGAGGTTCTTGACCAATCCAACATAGCCAATCGCAATTTGTCAGAATCCTACAAGGAGGGGAGCCCCATCGACAGGACCAGAATGTCTGTCACAAATGGTTTGAGGGTCAAGCTTAGGGACATGATGAATGACTTTCAGTCCTTGAGAGACAAGATTCTATCTTATCACAAGGAAGATTTGAAGAGAAGGTACTATACCGCAACGGGCGAGGTTCCTACTGAGGAAGATATGGAGAAGATGGTTTCAGGGAGTCTCAAAGTTGAGTTTTTGGCTGGGAAAACGGATGCTGATTCGGGCACTCAGGTTAGGCATGAGGCAGTGATGGATATTCAAAGGAGTTTGAATAAGCTTCATCAGGTTTTTCTTGATATGGCTGTTCTGGTTGAGACACAAGGAGAAAAGTTGGATAACATTGAGGATAATGTGGTTAGTGCAGGCAACTTCATCCATGGTGGGACAAATAGTCTTTACTATGCCAACCAGATGAAGAAGAACAAAAAATGGGTGTGTTGGATTTTTGCTGTGGGGCTGATTATACTACTAGTATGCATTGTTGCAATGTTTTCTTCTTGA 894 0.4374 MNDLMTKSFLSYAELKQQARKDLEDDLDLEAGKLNPTEDRNLSQFFQEVEAIKVEMEEITNLLIDLQQLNEETKCTHSAKVLRGLRDRMESDMVAVLRKARIIKAMLEVLDQSNIANRNLSESYKEGSPIDRTRMSVTNGLRVKLRDMMNDFQSLRDKILSYHKEDLKRRYYTATGEVPTEEDMEKMVSGSLKVEFLAGKTDADSGTQVRHEAVMDIQRSLNKLHQVFLDMAVLVETQGEKLDNIEDNVVSAGNFIHGGTNSLYYANQMKKNKKWVCWIFAVGLIILLVCIVAMFSS 297
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed11g1279 297 SMART tSNARE_6 199 266 IPR000727 -
Aed11g1279 297 Gene3D - 37 167 - -
Aed11g1279 297 CDD SNARE_syntaxin1-like 208 263 - -
Aed11g1279 297 CDD SynN 42 192 IPR006011 GO:0016020
Aed11g1279 297 Coils Coil 49 72 - -
Aed11g1279 297 Gene3D - 200 296 - -
Aed11g1279 297 SUPERFAMILY t-snare proteins 40 259 IPR010989 GO:0016020|GO:0016192
Aed11g1279 297 PANTHER SYNTAXIN 4 293 IPR045242 -
Aed11g1279 297 SMART SynN_4 37 164 IPR006011 GO:0016020
Aed11g1279 297 PANTHER SYNTAXIN-112 4 293 - -
Aed11g1279 297 Pfam SNARE domain 240 290 IPR000727 -
Aed11g1279 297 Pfam Syntaxin 44 239 IPR006011 GO:0016020
Aed11g1279 297 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 204 266 IPR000727 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed11g1279 Aed-Chr11 17848664 17849557 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed11g1279 1 297 SNARE and Associated Proteins AT2G18260 59.935 1.89e-132 376
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed11g1279 K08486 - gmx:112997615 536.954