Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed11g1261 ATGTTTTCCCCAAGAGACATGCCTTCCCCATCCTCAATTTTCTCAGCCTACGCCTCCATGACAGCCTCCATGATGCTTCTGCGTTCCATGGCCAACGAGCTGATTCCCCAACCCATCCGTGGCTACCTTTACAACACGTTCCGGTACCTCATCAAGCCTCGCTCCCCGACCCTGACCCTCATCATCGAAGAGTCCACCGGCATAGCCCGTAACCAAGTCTACGACGCCGCCGAGGCTTACCTCTCCACCCGAGTCAGCCCCGAAAACGAGAGACTCAAAATCAGCAAGAGCCAGAAAGAGAAAAAACTAACCGTTCGGTTGGAGAAAGGCGAGAAGGTAGTCGACTGCTTCAACGACGCGTGCTTCAAATGGAGATTCATCTGCGCCGAATCCGAAAAGAACAACCCCAACGACCAATCCACCAACAACATCTCCGTAAGGTCCGAAAAACGATCCTTCGAGCTGAGCTTCCCGAAGAAGTACAAGGAAATGGTTTTAGACTCCTACCTGCCCTTCATTCTCGACAAGGCCAAGGAGATGAAAGACGAGGAAAGAGTCTTAAAGATGCACACTCTCAACACCTCGTATTGTTACAGTGGTGTCAAATGGGACTCCATAAATTTGGAACACCCCTCCACTTTTGAGACGCTGGCGATGGAGCCAGAGCTAAAGAATGCTGTCATAGAGGACTTGGATAGGTTCGTGAAGAGGAAGGACTTTTATAAGAGGGTTGGGAGGGCGTGGAAACGTGGCTACTTGCTCTACGGCCCTCCTGGTACTGGCAAATCTAGCTTGATCGCTGCCATGGCGAATTACTTGAAGTTTGACATATTTGACCTCCAACTTGGGAACATAGTCAGGGATTCTGACCTCAGGAAACTTCTTCTGGCTACCGCTAATAGGTCCATTTTGGTCATTGAAGACATTGATTGCAGTGTGGATCTGCCAGAGCGTCGCCATGCTGATGGACGTAAACAACCTGACGTGCAGGCTCACCGTGCATCTGATGGATGGCAGTTGACATTGTCTGGATTACTGAACTTCATAGATGGGCTATGGTCAAGTTGTGGAGACGAGAGAATAATCATATTCACGACGAACCACAAGGAGAGGCTAGACCCAGCACTGTTGAGGCCAGGAAGAATGGACATGCACATTCACATGTCCTATTGCTCCTACCAAGGCTTCAAGATATTGGCCTCAAACTACTTGGAAACTACTTCCTCTGATATTCACAACCCCCTCTTTGGTGAGATAGAGGGGCTAATAGAGGACATTCAAATAACCCCTGCACAAGTAGCAGAGGAACTCATGAAGGACGAAAATGCCGAGGCCACACTTGAGGGATTCGTGAAGCTACTTAAGCGGAAGAAGATGGAAGGTGATGTGTGTGAGAACTCTACTCCTAAAAGGCGCAAGGTTGGTCGCAACAAGCAAAAGCGGGGTGTTAATAGTGGTGTCACTCAAAGAAGGACAACAAGAATGAGAGGGTGTAGCTTGTAA 1503 0.491 MFSPRDMPSPSSIFSAYASMTASMMLLRSMANELIPQPIRGYLYNTFRYLIKPRSPTLTLIIEESTGIARNQVYDAAEAYLSTRVSPENERLKISKSQKEKKLTVRLEKGEKVVDCFNDACFKWRFICAESEKNNPNDQSTNNISVRSEKRSFELSFPKKYKEMVLDSYLPFILDKAKEMKDEERVLKMHTLNTSYCYSGVKWDSINLEHPSTFETLAMEPELKNAVIEDLDRFVKRKDFYKRVGRAWKRGYLLYGPPGTGKSSLIAAMANYLKFDIFDLQLGNIVRDSDLRKLLLATANRSILVIEDIDCSVDLPERRHADGRKQPDVQAHRASDGWQLTLSGLLNFIDGLWSSCGDERIIIFTTNHKERLDPALLRPGRMDMHIHMSYCSYQGFKILASNYLETTSSDIHNPLFGEIEGLIEDIQITPAQVAEELMKDENAEATLEGFVKLLKRKKMEGDVCENSTPKRRKVGRNKQKRGVNSGVTQRRTTRMRGCSL 500
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed11g1261 500 ProSitePatterns AAA-protein family signature. 360 378 IPR003960 GO:0005524|GO:0016887
Aed11g1261 500 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 158 438 IPR027417 -
Aed11g1261 500 PANTHER BNAA10G17020D PROTEIN 6 471 - -
Aed11g1261 500 Pfam Domain associated at C-terminal with AAA 35 127 IPR025753 -
Aed11g1261 500 Pfam ATPase family associated with various cellular activities (AAA) 253 389 IPR003959 GO:0005524|GO:0016887
Aed11g1261 500 PANTHER BCS1 AAA-TYPE ATPASE 6 471 - -
Aed11g1261 500 MobiDBLite consensus disorder prediction 463 500 - -
Aed11g1261 500 MobiDBLite consensus disorder prediction 481 500 - -
Aed11g1261 500 Gene3D - 387 461 - -
Aed11g1261 500 CDD AAA 249 390 - -
Aed11g1261 500 Gene3D - 201 386 IPR027417 -
Aed11g1261 500 SMART AAA_5 248 392 IPR003593 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed11g1261 Aed-Chr11 17744489 17747981 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed11g1261 226 392 Calmodulin-binding Proteins AT3G56690 26.286 3.38e-10 60.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed11g1261 - - gmx:100789621 886.715
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed11g1261 11 17744489 17747981 Aed11g1261 11 17744489 17747981 ECH