Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Aed11g1254 | ATGGCGGGCATATTCTCATTAGGAGGGGGAGGGAATACCAACCCCCAACAAGAGGAAATTCCTCCTCTGGATAGTTTATACTGGAATAACAACAAGAATGACGACGTTTCCTCTTACCACCGAGGTGGCGGGTTTGAGTTGTGGAACCAGCAACAGTTCATGGGGCAAGGCCATCCTCCTTCTCAAGCAAGGCCTCTCTTTCACCAAGATCTCTACTCCGCTCTCGGAGTTGGACCTGCTAGGCCCATCCCTGACGATCAGTCGGACTCGAGATCCGGGTTCATGCTGGGACGAAGCACAAGCGGCGGTAGCGGAAGTGCAGGAGGAATTAGCTGTCAGGACTGCGGTAACCAAGCCAAGAAGGATTGCCCTCACATGCGATGCAGAACCTGCTGCAAGAGTCGTGGCTTCGATTGCCATACCCATGTCAAGAGCACTTGGGTCCCCGCTTCACGCCGTCGCGAAAGACAACAGCAACAACAACAGCTCACTGCTTTGCAACAAAACTTGGAACCTTCCTCCGGAGACCTTCCAAAGAGGCACAGGGAGAGAGATCATCAACTTAGCTCCTCTTCTCCCCTCGCCTGCACTCGCTTGCCTTCAAACCCCTCATCCACAGGGTTAGATGAGTCTAATTTCCCGTCTCTGGTGAGGTCTGCTGCGGAGTTCAAATGCGTACGTGTGAGCGCGATGGAGGAGGAGGCGGAGGAGGAGTATGCATACTCAACGACTGTGAACATTGCAGGACGTGTGTTCAAAGGAATTTTATATGATCATGGTCGAGAACCAGAAGGAAACACAAACTACATGGGTCATGGTGGTGCTGGGGAGAGCTCTTCCACTGGTCTTGCTGAACCACTTGTTGATCCTTCTTCCATGTATCCGGCTCCTCTTAACTCCTTCATGCCTGGTAGCAGCAGCGGTACGCAATTCTTCCCTCATCCACGATCTTGA | 954 | 0.5252 | MAGIFSLGGGGNTNPQQEEIPPLDSLYWNNNKNDDVSSYHRGGGFELWNQQQFMGQGHPPSQARPLFHQDLYSALGVGPARPIPDDQSDSRSGFMLGRSTSGGSGSAGGISCQDCGNQAKKDCPHMRCRTCCKSRGFDCHTHVKSTWVPASRRRERQQQQQQLTALQQNLEPSSGDLPKRHRERDHQLSSSSPLACTRLPSNPSSTGLDESNFPSLVRSAAEFKCVRVSAMEEEAEEEYAYSTTVNIAGRVFKGILYDHGREPEGNTNYMGHGGAGESSSTGLAEPLVDPSSMYPAPLNSFMPGSSSGTQFFPHPRS | 317 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Aed11g1254 | 317 | MobiDBLite | consensus disorder prediction | 298 | 317 | - | - | |
| Aed11g1254 | 317 | MobiDBLite | consensus disorder prediction | 148 | 211 | - | - | |
| Aed11g1254 | 317 | PANTHER | PROTEIN LATERAL ROOT PRIMORDIUM 1 | 1 | 317 | IPR007818 | GO:0003700|GO:0006355 | |
| Aed11g1254 | 317 | MobiDBLite | consensus disorder prediction | 77 | 109 | - | - | |
| Aed11g1254 | 317 | PANTHER | TRANSCRIPTION FACTOR STY-LRP1 FAMILY-RELATED | 1 | 317 | - | - | |
| Aed11g1254 | 317 | MobiDBLite | consensus disorder prediction | 9 | 27 | - | - | |
| Aed11g1254 | 317 | MobiDBLite | consensus disorder prediction | 92 | 109 | - | - | |
| Aed11g1254 | 317 | MobiDBLite | consensus disorder prediction | 152 | 174 | - | - | |
| Aed11g1254 | 317 | TIGRFAM | LRP1_Cterm: LRP1 C-terminal domain | 213 | 260 | IPR006511 | - | |
| Aed11g1254 | 317 | MobiDBLite | consensus disorder prediction | 189 | 211 | - | - | |
| Aed11g1254 | 317 | MobiDBLite | consensus disorder prediction | 1 | 27 | - | - | |
| Aed11g1254 | 317 | Pfam | Domain of unknown function (DUF702) | 109 | 262 | - | - | |
| Aed11g1254 | 317 | TIGRFAM | put_zinc_LRP1: putative zinc finger domain, LRP1 type | 111 | 153 | IPR006510 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Aed11g1254 | Aed-Chr11 | 17693305 | 17697107 | Dispersed/Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Aed11g1254 | 43 | 317 | C2H2 Transcription Factor Family | AT3G51060 | 45.342 | 5.50e-68 | 215 |
Transcription factors information
| Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
|---|---|---|---|---|---|---|---|
| TF | SRS | Aed11g1254 | DUF702 | 5.5e-61 | No_clan |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Aed11g1254 | - | - | gmx:100814589 | 469.159 |