Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed11g1241 ATGGAGTGCGTGGAGGCAGCGTTGAAGAGCAATTATAGGAAAGAAATGACCGTACAACTCAGCCCACAAAGCTTCGTGGAGGAGTTTAGTACTGTGCAGCTGCAAAACAACACCACCTGCGACGACTTTTTGGTGGACGACCTCCTTGACTTCTCGCACGTCGAAGAACAACAACAACAACCCGAACAACAAGACACTGCTTGTGTCTCCCTTCGACAAGAAAACCCAAGCCACGTGCCTTGTGCTTTCAAAGACGATTTTGCCTGTGTCCCTACCAGCGAGCTCAGCGTTCCGGCGGATGACGTGGCGGACTTAGAGTGGCTGTCTCATTTCGTGGAGGATTCCTTCTCGGAATTCTCCGCGGCGGCCTTACCCACCGTAACGGTGAACCCAACAACGGGCCTTAAAGAACCAAAGCCAGAGCCTAAACCGGAAAGTCCGGTTTTGTCATTCAAAACCCCGGTTCAGACCAAAGCGAGAAGCAAGCGAACCAGAAACGGTGTTCAGGTATGGGCACTAGGTTCACCTTCCTTCACCGAATCTTCCTCGAGCTCCACCACCACCACCACCACCACTTCCTCCTCTTCCTCTTCCTCCCCCTCTAGCCCCTTGCTAATTTACACCAACAACTTCTTCCCACAAGGCCTCGACCCCATCAAACCGAAGAAAAAACCCTCTTCCGATACCCTGGCGCCGCGACGGTGCAGTCATTGCGGCGTGCAGAAAACCCCTCAGTGGCGAACTGGGCCACTAGGCCCAAAAACACTTTGCAATGCCTGCGGGGTCCGCTTCAAGTCGGGCCGGCTCTTACCCGAATACAGGCCCGCTTGCAGCCCAACATTCTCAAATGAATTGCACTCGAACCATCATCGTAAAGTGCTCGAGATGCGGCGCAAGAAGGAGACACTTTCTGTTTCTGGGGTTGAGACTACTGGTTTTGCCCCTGCTACTATTGTTCCCAGTTTTTGA 969 0.5315 MECVEAALKSNYRKEMTVQLSPQSFVEEFSTVQLQNNTTCDDFLVDDLLDFSHVEEQQQQPEQQDTACVSLRQENPSHVPCAFKDDFACVPTSELSVPADDVADLEWLSHFVEDSFSEFSAAALPTVTVNPTTGLKEPKPEPKPESPVLSFKTPVQTKARSKRTRNGVQVWALGSPSFTESSSSSTTTTTTTSSSSSSSPSSPLLIYTNNFFPQGLDPIKPKKKPSSDTLAPRRCSHCGVQKTPQWRTGPLGPKTLCNACGVRFKSGRLLPEYRPACSPTFSNELHSNHHRKVLEMRRKKETLSVSGVETTGFAPATIVPSF 322
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed11g1241 322 ProSiteProfiles GATA-type zinc finger domain profile. 229 265 IPR000679 GO:0006355|GO:0043565
Aed11g1241 322 SMART GATA_3 229 283 IPR000679 GO:0006355|GO:0043565
Aed11g1241 322 PIRSF Txn_fac_GATA_plant 1 319 IPR016679 GO:0003677|GO:0005634|GO:0045893
Aed11g1241 322 PANTHER GATA TRANSCRIPTION FACTOR 1 302 - -
Aed11g1241 322 MobiDBLite consensus disorder prediction 129 202 - -
Aed11g1241 322 PANTHER GATA TRANSCRIPTION FACTOR 1 302 - -
Aed11g1241 322 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 232 292 - -
Aed11g1241 322 Gene3D - 226 302 IPR013088 GO:0006355|GO:0008270
Aed11g1241 322 MobiDBLite consensus disorder prediction 150 202 - -
Aed11g1241 322 ProSitePatterns GATA-type zinc finger domain. 235 260 IPR000679 GO:0006355|GO:0043565
Aed11g1241 322 CDD ZnF_GATA 234 283 IPR000679 GO:0006355|GO:0043565
Aed11g1241 322 Pfam GATA zinc finger 235 269 IPR000679 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed11g1241 Aed-Chr11 17608177 17610402 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed11g1241 5 301 C2C2-Gata Transcription Factor Family AT5G66320 49.387 2.32e-74 230
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Aed11g1241 GATA 1.5e-16 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed11g1241 - - gmx:100783966 427.943
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed11g1241 11 17608177 17610402 Aed11g1241 11 17608177 17610402 ECH