Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed11g1237 ATGGACCAGCCGCTTCAACCGCAGCTGGACACTGCCGCGCCCGGTGCTAGGGATTTAGTCGACTCCCGCCAGCTGGTCGGAGTCCCCGTCGTGCTCGCTCGCGATGCTCACGTGGCGGAGAGAGATGGAAATTGTTTCGTACCGAATTTGCAGGTTACTGTAGTGGACGGTGGTGGTGCCGTTTTGAAACGGAAGCGCGGTCGGCCGGCCAAGGGAGCGCCCAAAGTGTCGCCTCCGGTCAGGCAGAAGAAGGACGAGGAGGACGTTTGTTTCATTTGCTTCGACGGCGGGAGCCTCGTTCTCTGCGATCGCCGGGGCTGTCCAAAAGCGTATCATCCCGCGTGTATTAAGCGAGACGATGAGTTTTTTCGATCAAAGGCCAAGTGGAATTGCGGTTGGCATTTATGTAGCGCATGTCAGAAGTCGTCACATTATATGTGCTATACTTGCACGTACTCTTTGTGTAAGGGATGCACAAAAGATGCTGATTTTGTTTGTGTCAGAGAGAATAAAGGTTTGTGCGGAATATGCATGAGGACTATAATGATGATTGAGAACAGTGCCCAGGGAAATAAGGAAAAGTGTGACGTGGATTTTGATGACAAAAGCAGCTGGGAGTATCTTTTCAAGGTGTATTGGATGTATTTGAAAGGGAAGCTATCTTTAACATTTGATGAGCTCCTTCGAGCTAAAAACCCATGGAAAAGTGCTGCTCTTATAAGTTATAAGGTTCAAAGCCCCCATGAACTTTATCATCTTAGAGATGACAAAGGTTCTGGTTCTGAGAACTCCTGTATAGACATAGAATCAAATAATTTGAAGAACAAGAGGCCCAAGAGACAACCAAAGCTTCTTGGTAAGGGTGATTGCTTGGATAGGGTAACTTCAGGTGGTGGGTCTTTGCCTGAATGCACAAAATGGGCATCGAAGGAGCTTCTAGACTTTGTTGCACATATGAAAAATGGTGATACATCTCTCCTGTCTCAATTTGATGTCCAGACTCTCTTGCTGGAGTATGCAAAAAAAAATAATCTTCGTGATCCTCAACAGAAGTCCCAAATTGTTTGCGACTCTAGACTATTAAATTTGTTTGGAAAAGCACGTGTTGGCCACATTGAAATGCTAAAGCTCCTTGAACCCCACTTTCTTTTAAAAGACAATGATCTTGTGGAAAATACTTTTGGAGCGGGAATTATTAATGGTCTTGCTAGTGAAGGGGAGGCCATTGACATTTACAATAAACAGTTGATGTTAGGTGATGGCAAGAGATGTAAGACACATAATCCAAATGCATATGCTGCAATAGATGTTCACAACATTAACTTGATCTACTTGCGGCGAAATCTGATGGAGAATCTAACTGAAGATATTGAAAAGATTCATGAGAAGGTTGTTGGTTCATTTGTGCGGATAAGAATATCTAGCAGTGATCAAAAACAAGATATGTATAGACTTGTCCAAGTTGTAGGTTCAAGCAAGGTTGCCGAACCTTACAAAATTGGTGCAAGAACAACTGATATTAAGCTTGAAATTTTAAACTTAAACAGGAAGGAGGGCATATCCATTGCTGATATTTCTAATCAAGAGTTCTCTGAGGATGAATGCAAGCGGTTGCGTCAGAGTATAAAATATGGTCTCTCAAAGAGATTAACTGTGGGAGAGATTCTAAACAAAGCAGTGGCACTTCAAGCAATTAGAGTTAATGATTTGCTGGAAGCTGAGATATTGCGGCTTAATCATCTTCGTGATAGAGCAAGTGAAATGGGGCATAGAAAAGAATATCCTTTACCATTTACTACTTTATTCTTTGATGGGTTAAGCAATAAATGGGTAGGTGCACATTAG 1845 0.4287 MDQPLQPQLDTAAPGARDLVDSRQLVGVPVVLARDAHVAERDGNCFVPNLQVTVVDGGGAVLKRKRGRPAKGAPKVSPPVRQKKDEEDVCFICFDGGSLVLCDRRGCPKAYHPACIKRDDEFFRSKAKWNCGWHLCSACQKSSHYMCYTCTYSLCKGCTKDADFVCVRENKGLCGICMRTIMMIENSAQGNKEKCDVDFDDKSSWEYLFKVYWMYLKGKLSLTFDELLRAKNPWKSAALISYKVQSPHELYHLRDDKGSGSENSCIDIESNNLKNKRPKRQPKLLGKGDCLDRVTSGGGSLPECTKWASKELLDFVAHMKNGDTSLLSQFDVQTLLLEYAKKNNLRDPQQKSQIVCDSRLLNLFGKARVGHIEMLKLLEPHFLLKDNDLVENTFGAGIINGLASEGEAIDIYNKQLMLGDGKRCKTHNPNAYAAIDVHNINLIYLRRNLMENLTEDIEKIHEKVVGSFVRIRISSSDQKQDMYRLVQVVGSSKVAEPYKIGARTTDIKLEILNLNRKEGISIADISNQEFSEDECKRLRQSIKYGLSKRLTVGEILNKAVALQAIRVNDLLEAEILRLNHLRDRASEMGHRKEYPLPFTTLFFDGLSNKWVGAH 614
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed11g1237 614 Gene3D - 435 564 IPR036128 GO:0003677
Aed11g1237 614 PANTHER BNAC08G48800D PROTEIN 42 595 - -
Aed11g1237 614 SMART swib_2 304 387 IPR019835 -
Aed11g1237 614 ProSitePatterns Zinc finger PHD-type signature. 90 150 IPR019786 -
Aed11g1237 614 ProSiteProfiles Zinc finger PHD-type profile. 87 153 IPR019787 -
Aed11g1237 614 SUPERFAMILY SWIB/MDM2 domain 306 383 IPR036885 -
Aed11g1237 614 ProSiteProfiles SWIB/MDM2 domain profile. 301 384 IPR003121 -
Aed11g1237 614 SMART PHD_3 89 135 IPR001965 -
Aed11g1237 614 Gene3D SWIB/MDM2 domain 300 389 IPR036885 -
Aed11g1237 614 Pfam Plus-3 domain 439 542 IPR004343 GO:0003677
Aed11g1237 614 SUPERFAMILY Plus3-like 435 563 IPR036128 GO:0003677
Aed11g1237 614 SMART rtf1 434 544 IPR004343 GO:0003677
Aed11g1237 614 CDD PHD5_NSD 89 134 - -
Aed11g1237 614 Pfam SWIB/MDM2 domain 309 382 IPR003121 -
Aed11g1237 614 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 82 180 IPR013083 -
Aed11g1237 614 ProSiteProfiles Plus3 domain profile. 434 567 IPR004343 GO:0003677
Aed11g1237 614 PANTHER UNCHARACTERIZED 42 595 - -
Aed11g1237 614 CDD SWIB-MDM2_like 307 382 - -
Aed11g1237 614 SUPERFAMILY FYVE/PHD zinc finger 84 136 IPR011011 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed11g1237 Aed-Chr11 17545620 17553069 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed11g1237 87 175 PHD Transcription Factor Family AT5G36670 30.769 7.36e-07 50.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SWI/SNF-BAF60b Aed11g1237 Plus-3 6.8e-23 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed11g1237 - - gmx:100801151 1080.09