Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed11g1231 ATGCCTGTTCTTCTCATCCTCATGGTGCTGTGCGCACCGCTGTTAACGTTCGCCGATCGTAGCGCCGTAACCGTCTCTGAGATCCAAGCCCTGACGTCCTTCAAGCTCAACCTCCACGATACCGTCGGAGCTCTCGACGATTGGGATCCATCGTCGCCGGCGGCGCCATGCGACTGGCGCGGAGTCGGGTGTACCAACGACCGTGTCACGGAGCTGCGTCTGCCTCGTCTTCAACTCGGTGGAAGACTCAGTGAGCGTATCTCCGAGTTGCGCATGCTGCGTAAGATAAGCCTTCGTTCAAACTACTTCAACGGAACCATTCCTTCGTCGCTCTCCAAATGCACTCTCCTACGGTCACTGTTCTTGCAGGAGAATTCGTTTTCCGGGAACCTTCCGGCGGAGATCGCGAACCTTACCGGCCTTCAAATTCTCAACGTCGCGCAGAACCACCTCTCCGGCAGCGTCCCCGGCGAGCTTCCTCTCGGCCTCAAAACCCTCGACCTCTCCTCAAATGCTTTCTCCGGCGAGATTCCCAGCTCCATTGCGAACCTCACTCAGCTTCAGTTGATAAATCTTTCCTACAACGAGTTCTCCGGCGAGATACCGGCGACTCTCGGGGAGCTTCAGGAGCTGCAGTACCTCTGGCTGGACCACAACCTCGTCGGAGGAACGCTTCCTTCGGCGCTCGCTAACTGCTCCGCGCTTTTGCATCTGAGCGTGGAAGGAAACGGGCTCACCGGCGTGATTCCGTCGGCGATTTCGGCGCTTCCGAGGCTTCAGGTGATGTCGCTCTCTCAGAACAACCTCACTGGTTCCGTTCCGGGTTCCGTTTTCTGCAACGGTTCCGTCCACGCGCCGTCGCTGCGGATTGTTCATCTCGGATTCAACAGTTTCACGGATTTCGTGGGGCCTGAGACCAGCACGTGTCTCAGCATTCTTCAGGTTTTGGATATTCAGCACAATCGCATACGAGGCACGTTTCCGTTGTGGTTGACCAACGTGACAACGTTGACCATGCTTGACGTTTCCAGCAATGCACTTTCCGGCGAGGTTCCGCCGGAAATAGGAAACCTTATCAAGTTGGAGGAGTTGAGGATGGCTAATAATTCCTTCACCGGCATCATTCCGGTGGAACTCAAGAAATGTGGGTCCCTAAGCGTCGTTGATTTTGAAGGCAACAAGTTTGGCGGAGAAGTTCCCTCGTTTTTCGGTGATATGATTGACCTCAAGGTATTATCTCTTGGTGGGAACCACTTCTCTGGTTCGGTTCCGGTGAGTTTTGGTAACCTTTCATTGCTTGAAACGTTGAGTTTGAGAGGTAATAGGTTGAATGGAAGTATGCCTGAGATTATAATGAGATTGAATAATTTGACCACGCTGGACCTTAGTGGAAACAAATTTACAGGTCAAGTTTTTTCGAGTATTGGGAGTTTGAATAGGTTAATGGTTCTCAATCTGAGTGGCAATGGCTTCTCTGGAAAAATCCCTGCTAGTTTGGGGAATCTTTTCAGGCTAACTACACTTGACTTGAGCAAACAGAATTTTTCTGGCGAGTTACCACTTGAGCTCTCGGGGTTGCCGAGTTTGCAAGTTGTTGCACTTCAGGAGAACAAACTATCTGGGGATGTACCTGAAGGGTTTAGCAGTTTGATGAGTTTGCAGTACGTGAATCTCAGTTCTAATGCATTTTCTGGGCATATTCCTGAAAATTATGGCTTTCTACGTTCCTTGCTTGTTCTTTCGTTGTCTGATAATCACATTACAGGAACAGTCCCTTCGGAAATTGGAAACTGCTCTGGTATTGAAATTCTTGAACTTGGATCAAATTCTTTGGCAGGTCACGTTCCTGCTGATCTCTCTCGCCTCACCCTTTTGAAAGTGCTTGACTTGAGTGGGAACAATTTAACTGGAGATGTGCCTGAGGAAATATCCAAATGCTCATCGTTAATCACTTTGTTTGTGGATCATAACCAGCTTTCAGGGGCCATACCTGGGTCGCTGGCGGACCTATCAAACCTAACAATGCTGGATCTCTCCGCTAACAAGTTGAGTGGGGTAATTCCGAGTAATCTTTCTATGATCACAGGTTTGGTGTACTTCAATGTCTCAGGAAATCACCTGGAAGGTGAGATACCACCAACATTGGGATCCCGGTTCAGCAACCCCTCTGTATTCGCAAATAATCAGGGTTTATGTGGGAAGCCATTGGATACTAAATGTGAAGATACGAACGGTGGGAACAAAAAGAGGTTGATTGTGCTGGTGGTTGTCATTGCTTGTGGAGCTATTGCACTAGTTTTATTTTGCTGCTTCTACGTGTTCAGTCTACTGAGATGGCGAAAAAGACTGAAACAAGGAGTATCTGGTGAAAAGAAAAAGAGTCCCGCCAGAGCCAGCTCTGGAACAAGTGGAGCTCGTAGCAGCAGCACTGAGAGTGGGGGACCAAAACTAGTGATGTTCAACACCAAAATTACACTTACTGAGACCATTGAAGCAACAAGACAATTCGACGAAGAGAACGTGCTGAGCAGAACAAGGCATGGATTAGTGTTCAAGGCCTGCTACAACGATGGAATGGTCCTTTCCGTTCGCAGGCTCCAAGATGGATCATTGGATGAGAACATGTTTAGAAAAGAAGCCGAATCACTAGGCAAAGTCAGGCACCGGAATTTAACAGTTCTCAGAGGTTACTATGCAGGTCCACCTGACATGAGACTCCTAGTCTACGACTACATGCCCAATGGAAACCTTGCAACCCTCCTCCAAGAAGCTTCTCACCAAGATGGCCACGTTCTAAATTGGCCAATGCGACACCTCATAGCCCTTGGAATTGCCCGTGGCTTAGCCTTCCTACACCAATCCACAATGGTCCATGCCGATGTGAAACCACAAAACGTCCTATTCGATGCAGATTTCGAAGCCCACTTGTCAGATTTTGGGTTAGACAAGTTAACAATAGCCACTCCAGGCGAAGCCGCAGCCTCCACTTCATCATCCGTTGGCACGTTGGGTTACGTTTCTCCAGAAGCAATCTTAACCGGGGAAGCCACAAATGAGAGTGATGTCTACAGCTTTGGCATTGTGTTGCTGGAACTACTGACAGGAAAACGACCTGTGATGTTCACCCAGGACGAAGACATAGTGAAGTGGGTGAAAAAACAACTTCAGAGAGGTCAAATAACAGAGCTATTAGAACCGGGGTTGCTTGAGTTGGACCCAGAATCATCAGAGTGGGAAGAGTTTCTACTGGGAGTAAAAGTTGGGTTGCTATGCACAGCACCTGACCCTCTTGACCGACCAACCATGTCTGACATCGTTTTCATGCTTGAAGGCTGTAGAGTCGGTCCTGATATCCCATCCTCCGCTGATCCCACTTCTCAGCCTTCTCCGGCATAA 3396 0.4906 MPVLLILMVLCAPLLTFADRSAVTVSEIQALTSFKLNLHDTVGALDDWDPSSPAAPCDWRGVGCTNDRVTELRLPRLQLGGRLSERISELRMLRKISLRSNYFNGTIPSSLSKCTLLRSLFLQENSFSGNLPAEIANLTGLQILNVAQNHLSGSVPGELPLGLKTLDLSSNAFSGEIPSSIANLTQLQLINLSYNEFSGEIPATLGELQELQYLWLDHNLVGGTLPSALANCSALLHLSVEGNGLTGVIPSAISALPRLQVMSLSQNNLTGSVPGSVFCNGSVHAPSLRIVHLGFNSFTDFVGPETSTCLSILQVLDIQHNRIRGTFPLWLTNVTTLTMLDVSSNALSGEVPPEIGNLIKLEELRMANNSFTGIIPVELKKCGSLSVVDFEGNKFGGEVPSFFGDMIDLKVLSLGGNHFSGSVPVSFGNLSLLETLSLRGNRLNGSMPEIIMRLNNLTTLDLSGNKFTGQVFSSIGSLNRLMVLNLSGNGFSGKIPASLGNLFRLTTLDLSKQNFSGELPLELSGLPSLQVVALQENKLSGDVPEGFSSLMSLQYVNLSSNAFSGHIPENYGFLRSLLVLSLSDNHITGTVPSEIGNCSGIEILELGSNSLAGHVPADLSRLTLLKVLDLSGNNLTGDVPEEISKCSSLITLFVDHNQLSGAIPGSLADLSNLTMLDLSANKLSGVIPSNLSMITGLVYFNVSGNHLEGEIPPTLGSRFSNPSVFANNQGLCGKPLDTKCEDTNGGNKKRLIVLVVVIACGAIALVLFCCFYVFSLLRWRKRLKQGVSGEKKKSPARASSGTSGARSSSTESGGPKLVMFNTKITLTETIEATRQFDEENVLSRTRHGLVFKACYNDGMVLSVRRLQDGSLDENMFRKEAESLGKVRHRNLTVLRGYYAGPPDMRLLVYDYMPNGNLATLLQEASHQDGHVLNWPMRHLIALGIARGLAFLHQSTMVHADVKPQNVLFDADFEAHLSDFGLDKLTIATPGEAAASTSSSVGTLGYVSPEAILTGEATNESDVYSFGIVLLELLTGKRPVMFTQDEDIVKWVKKQLQRGQITELLEPGLLELDPESSEWEEFLLGVKVGLLCTAPDPLDRPTMSDIVFMLEGCRVGPDIPSSADPTSQPSPA 1131
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed11g1231 1131 Gene3D Ribonuclease Inhibitor 382 454 IPR032675 -
Aed11g1231 1131 Gene3D Ribonuclease Inhibitor 301 381 IPR032675 -
Aed11g1231 1131 MobiDBLite consensus disorder prediction 795 816 - -
Aed11g1231 1131 ProSiteProfiles Protein kinase domain profile. 836 1118 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aed11g1231 1131 Pfam Leucine rich repeat 163 220 IPR001611 GO:0005515
Aed11g1231 1131 Pfam Leucine rich repeat 648 707 IPR001611 GO:0005515
Aed11g1231 1131 Pfam Leucine rich repeat 286 347 IPR001611 GO:0005515
Aed11g1231 1131 Pfam Leucine rich repeat 576 635 IPR001611 GO:0005515
Aed11g1231 1131 SUPERFAMILY Protein kinase-like (PK-like) 816 1119 IPR011009 -
Aed11g1231 1131 ProSitePatterns Serine/Threonine protein kinases active-site signature. 956 968 IPR008271 GO:0004672|GO:0006468
Aed11g1231 1131 PANTHER INACTIVE LEUCINE-RICH REPEAT RECEPTOR KINASE XIAO-RELATED 4 1127 - -
Aed11g1231 1131 Gene3D Transferase(Phosphotransferase) domain 1 912 1117 - -
Aed11g1231 1131 Pfam Protein kinase domain 848 1105 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aed11g1231 1131 SUPERFAMILY L domain-like 480 735 - -
Aed11g1231 1131 Gene3D Ribonuclease Inhibitor 162 300 IPR032675 -
Aed11g1231 1131 Gene3D Ribonuclease Inhibitor 455 744 IPR032675 -
Aed11g1231 1131 Gene3D Phosphorylase Kinase; domain 1 801 911 - -
Aed11g1231 1131 Pfam Leucine rich repeat N-terminal domain 27 64 IPR013210 -
Aed11g1231 1131 MobiDBLite consensus disorder prediction 788 816 - -
Aed11g1231 1131 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 4 1127 - -
Aed11g1231 1131 SUPERFAMILY L domain-like 332 568 - -
Aed11g1231 1131 SUPERFAMILY L domain-like 25 330 - -
Aed11g1231 1131 Pfam Leucine Rich repeat 455 469 IPR001611 GO:0005515
Aed11g1231 1131 PRINTS Leucine-rich repeat signature 670 683 - -
Aed11g1231 1131 PRINTS Leucine-rich repeat signature 625 638 - -
Aed11g1231 1131 Pfam Leucine Rich Repeat 481 502 IPR001611 GO:0005515
Aed11g1231 1131 Gene3D Ribonuclease Inhibitor 24 161 IPR032675 -
Aed11g1231 1131 SMART LRR_typ_2 90 114 IPR003591 -
Aed11g1231 1131 SMART LRR_typ_2 256 280 IPR003591 -
Aed11g1231 1131 SMART LRR_typ_2 184 208 IPR003591 -
Aed11g1231 1131 SMART LRR_typ_2 358 381 IPR003591 -
Aed11g1231 1131 SMART LRR_typ_2 574 598 IPR003591 -
Aed11g1231 1131 SMART LRR_typ_2 526 549 IPR003591 -
Aed11g1231 1131 SMART LRR_typ_2 478 502 IPR003591 -
Aed11g1231 1131 SMART LRR_typ_2 406 429 IPR003591 -
Aed11g1231 1131 SMART LRR_typ_2 670 694 IPR003591 -
Aed11g1231 1131 SMART LRR_typ_2 454 474 IPR003591 -
Aed11g1231 1131 SMART LRR_typ_2 622 646 IPR003591 -
Aed11g1231 1131 SMART LRR_typ_2 430 453 IPR003591 -
Aed11g1231 1131 SMART LRR_typ_2 138 162 IPR003591 -
Aed11g1231 1131 SMART serkin_6 836 1108 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aed11g1231 1131 SMART LRR_sd22_2 622 645 - -
Aed11g1231 1131 SMART LRR_sd22_2 670 693 - -
Aed11g1231 1131 SMART LRR_sd22_2 454 480 - -
Aed11g1231 1131 SMART LRR_sd22_2 160 186 - -
Aed11g1231 1131 SMART LRR_sd22_2 208 234 - -
Aed11g1231 1131 SMART LRR_sd22_2 334 360 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed11g1231 Aed-Chr11 17506694 17510089 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed11g1231 3 1131 Receptor kinase-like Gene Family AT4G36180 69.271 0.0 1513
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VII-3 Aed11g1231 Pkinase 1.7e-34 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed11g1231 - - gmx:100795838 2032.68