Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed11g1230 ATGGTTGGTTTCAGCGGCGATGAAACTGCTCCGTTCTTCGGATTCCTTGGCGCGGCGGCCGCGCTAGTATTCTCCTGTATGGGAGCGGCGTACGGCACGGCGAAGAGCGGCGTTGGCGTTGCGTCGATGGGCGTGATGAGACCGGAGCTGGTGATGAAATCCATTGTTCCGGTTGTTATGGCCGGAGTGTTGGGAATCTACGGCTTGATCATCGCCGTCATCATCAGCACCGGCATTAACCCCAAGGCCAAATCCTACTATCTCTTCGACGGCTACGCTCACCTCTCCTCCGGCCTCGCTTGCGGCCTCGCTGGCCTCTCCGCTGGCATGGCCATTGGTATTGTTGGCGACGCCGGTGTTAGGTATCCTCACTCCTTTTCTTTTGTAATTGCTCCTGGTTTTGAATTTGTGATAAGAATTTCAATGGTCGATTATCTTCTAGCAAATGCCCAACAGCCAAAGCTTTTTGTTGGGATGATTCTCATTCTCATCTTTGCTGAGGCATTGGCATTGTATGGACTCATTGTTGGCATCATCCTCTCTTCCCGCGCTGGCCAATCCAGAGCTGAGTAG 573 0.5323 MVGFSGDETAPFFGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGINPKAKSYYLFDGYAHLSSGLACGLAGLSAGMAIGIVGDAGVRYPHSFSFVIAPGFEFVIRISMVDYLLANAQQPKLFVGMILILIFAEALALYGLIVGIILSSRAGQSRAE 190
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed11g1230 190 PANTHER V-TYPE PROTON ATPASE PROTEOLIPID SUBUNIT 3 122 - -
Aed11g1230 190 CDD ATP-synt_Vo_c_ATP6C_rpt2 88 181 - -
Aed11g1230 190 SUPERFAMILY F1F0 ATP synthase subunit C 13 76 IPR035921 -
Aed11g1230 190 PANTHER V-TYPE PROTON ATPASE PROTEOLIPID SUBUNIT 146 190 - -
Aed11g1230 190 Pfam ATP synthase subunit C 16 75 IPR002379 GO:0015078|GO:0033177|GO:1902600
Aed11g1230 190 Pfam ATP synthase subunit C 147 180 IPR002379 GO:0015078|GO:0033177|GO:1902600
Aed11g1230 190 SUPERFAMILY F1F0 ATP synthase subunit C 141 181 IPR035921 -
Aed11g1230 190 PANTHER V-TYPE PROTON ATPASE PROTEOLIPID SUBUNIT 146 190 - -
Aed11g1230 190 CDD ATP-synt_Vo_c_ATP6C_rpt1 12 79 - -
Aed11g1230 190 SUPERFAMILY F1F0 ATP synthase subunit C 86 121 IPR035921 -
Aed11g1230 190 PRINTS Vacuolar ATP synthase 16kDa subunit signature 29 53 IPR000245 GO:0033179|GO:0046961|GO:1902600
Aed11g1230 190 PRINTS Vacuolar ATP synthase 16kDa subunit signature 55 79 IPR000245 GO:0033179|GO:0046961|GO:1902600
Aed11g1230 190 PRINTS Vacuolar ATP synthase 16kDa subunit signature 106 132 IPR000245 GO:0033179|GO:0046961|GO:1902600
Aed11g1230 190 Gene3D - 10 129 IPR035921 -
Aed11g1230 190 Gene3D - 130 187 IPR035921 -
Aed11g1230 190 PANTHER V-TYPE PROTON ATPASE PROTEOLIPID SUBUNIT 3 122 - -
Aed11g1230 190 TIGRFAM V_ATP_synt_C: V-type ATPase, C subunit 12 120 IPR011555 GO:0033179|GO:0046961|GO:1902600
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed11g1230 Aed-Chr11 17502308 17504248 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed11g1230 3 190 Primary Pumps ATPases(2) AT1G75630 85.714 1.42e-108 307
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed11g1230 K02155 - jre:108991387 270.781