Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed11g1228 ATGTCTGCAGTCGAAGAAGCCAACGCTCCCGCCGTCGAAAAGCCGGTCGAGGAGGTGAAGGCGCCAGAAGCGCCGAAGCCTGCGAAGGAGAAGAAAACTAAGGCACCGAAGGAAAAGAAGCCGAAACAGACCAAAACTTCTTCTCATCCTCCATATTTCCAGATGATTAAGGAGGCTTTGATTGGTTTGAACGAGAAGGGAGGATCGAGTCCTTATGCGATAGCGAAGTACATGGAGGAGAAGCACAGGGCGGTGCTCCCTGCGAATTTCAAGAAGATTCTAGGGCTTCAATTAAAGAACCAAGCTGCGAGAGGGAAACTCGTTAAGATCAAGGCTTCGTACAAGGTATCCGAAGCAGAGAAGAAAGATAAGAAGGAGAGCATGACCAAGGCCAAGGCAGAGAAGAAGGAATCGCGTCCGAAACGAAGCAGAACCGCAACCGCCGCAGCTCCGAAGAAAGCCGAAACAGTTAAGAAGGTTGGGCCGAAGAAGACGAAGAAAGTGTCGACTCCCGCGAAGCCCAAGCAGCCCAAGTCCATTAGGTCTCCGGTGAAGAGGGCCCGGAGAGCTACTGTTGCTGCGGCTTGA 588 0.5221 MSAVEEANAPAVEKPVEEVKAPEAPKPAKEKKTKAPKEKKPKQTKTSSHPPYFQMIKEALIGLNEKGGSSPYAIAKYMEEKHRAVLPANFKKILGLQLKNQAARGKLVKIKASYKVSEAEKKDKKESMTKAKAEKKESRPKRSRTATAAAPKKAETVKKVGPKKTKKVSTPAKPKQPKSIRSPVKRARRATVAAA 195
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed11g1228 195 MobiDBLite consensus disorder prediction 11 34 - -
Aed11g1228 195 PANTHER HISTONE H1 4 191 - -
Aed11g1228 195 Pfam linker histone H1 and H5 family 49 111 IPR005818 GO:0000786|GO:0003677|GO:0006334
Aed11g1228 195 Coils Coil 114 134 - -
Aed11g1228 195 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 48 118 IPR005818 GO:0000786|GO:0003677|GO:0006334
Aed11g1228 195 SUPERFAMILY "Winged helix" DNA-binding domain 45 128 IPR036390 -
Aed11g1228 195 CDD H15 46 125 IPR005818 GO:0000786|GO:0003677|GO:0006334
Aed11g1228 195 Gene3D - 42 141 IPR036388 -
Aed11g1228 195 PRINTS Histone H5 signature 166 183 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Aed11g1228 195 PRINTS Histone H5 signature 35 56 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Aed11g1228 195 PRINTS Histone H5 signature 62 79 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Aed11g1228 195 PRINTS Histone H5 signature 135 149 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Aed11g1228 195 MobiDBLite consensus disorder prediction 116 143 - -
Aed11g1228 195 PANTHER HISTONE H1 4 191 - -
Aed11g1228 195 SMART h15plus2 46 113 IPR005818 GO:0000786|GO:0003677|GO:0006334
Aed11g1228 195 MobiDBLite consensus disorder prediction 116 195 - -
Aed11g1228 195 MobiDBLite consensus disorder prediction 1 53 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed11g1228 Aed-Chr11 17476089 17477046 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed11g1228 36 116 Single Myb Histone (SMH) Gene Family AT1G72740 37.037 4.73e-08 50.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed11g1228 K11275 - gmx:100500169 237.269
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed11g1228 11 17476089 17477046 Aed11g1228 11 17476089 17477046 ECH