Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed11g1212 ATGGGCATCTGTTTCTCCGCCACCAAGGTCAGCGGCTCCAGCAGCAACAACGCTGGCGCCTCCGGAAAACGCAAAGGTTCCAAAAGTTCCAAAGGTTCCGCCGCGTCGGCGCCGAAGCCGGCGCCGGTGACAGCGCAGAAGCAGCTAGAGCCTCAGGGTCAACGCCGGCAACGGGTGCAGGAGGATACGCAGAAAATCCCACGCGCCAAGGACAAAGCCGGTGCGCGTCGGCAAGGGGGGCATGTTCCGTGCGGAAAGCGAACGGATTTCGGGTACCAGAAAGACTTCGACAAGAGATTCTCGCTCGGGAAATTGTTGGGGCATGGGCAATTCGGTTACACCTATGTTGGAATAGACAAAGCAAATGGGGATCGTGTCGCTGTTAAGAGACTCGAGAAGAGCAAGATGATTCTCCCCATCGCAGTTGAGGATGTTAAGAGAGAAGTCAAGATATTGAAAGAACTTACAGGCCATGAAAACGTGGTTCAGTTCTATAATGCTTTTGAGGATGATTCATATGTGTACATAGTTATGGAGTTATGTGAGGGGGGAGAACTGCTAGATAGGATATTGGCCAAGAAGGACAGTCGTTATACTGAAAAAGATGCAGCTGTGGTTGTAAGGCAGATGCTTAAGGTTGCGGCTGAGTGTCATTTACATGGGTTGGTACATCGGGACATGAAACCAGAGAATTTTCTTTTCAAGTCAACCAAAGAAGATTCACCTTTAAAGGCTACCGATTTTGGTTTGTCTGATTTCATAAAACCTGGAAAGTGGTTTAAAGATATTGTTGGCAGTGCTTACTATGTTGCACCAGAAGTGTTAAAACGAAAGTCAGGTCCTGAGTCAGATGTATGGAGTATTGGTGTGATTACATATATATTGCTTTGTGGGAGACGCCCATTTTGGGATAAGACGGAGGATGGTATCTTCAAGGAGGTCTTACGGAACAGACCAGATTTCCGGCGGAAACCATGGCCAACCATAAGCAATGCTGCAAAAGATTTTGTTAAGAAATTGTTGGTAAAAGATCCTCGCGCAAGATATACTGCTGCTCAGGCTCTATCACATCCATGGGTTAAAGAAGGAGGAGCGGCATTAGAGATTCCTATTGATATATCTGTCCTGAGCAACATGCGACAGTTTGTGAAATATAGTCGGTTGAAACAATTTGCACTAAGGGCATTGGCTAGCACACTTGATGAAGCAGAGTTGTCTGATCTAAAAGATCAGTTTGATGCAATAGATGTGGACAAAAATGGTTCTATTAGTCTTGAGGAGATGAGACAGGCTCTTGCTAAAGATCTCCCTTGGAAGTTGAAAGAATCACGTGTACTAGAGATATTGCAAGCGATAGACAGCAACACAGATGGGCTAGTGGATTTCACCGAGTTTGTGGCAGCTACATTACATGTACATCAATTGGAGGAACATGATTCTGATAGGTGGCAGCACCGGTCACAGGCTGCTTTTGAGAAATTTGACTTGGATAAGAATGGCTATATTACTGCAGATGAACTTAGAATGCATACAGGTTTGAGAGGCTCCATTGATCCATTGCTTGAGGAAGCTGATATTGATAAAGATGGAAAAATCAGCTTGCCAGAATTTCGTAAACTTCTAAGAACTGCAAGCATTGGCTCTCGAACCATAATGAGTCCGAGTCACCATAATCGAAAGATGTAG 1686 0.4537 MGICFSATKVSGSSSNNAGASGKRKGSKSSKGSAASAPKPAPVTAQKQLEPQGQRRQRVQEDTQKIPRAKDKAGARRQGGHVPCGKRTDFGYQKDFDKRFSLGKLLGHGQFGYTYVGIDKANGDRVAVKRLEKSKMILPIAVEDVKREVKILKELTGHENVVQFYNAFEDDSYVYIVMELCEGGELLDRILAKKDSRYTEKDAAVVVRQMLKVAAECHLHGLVHRDMKPENFLFKSTKEDSPLKATDFGLSDFIKPGKWFKDIVGSAYYVAPEVLKRKSGPESDVWSIGVITYILLCGRRPFWDKTEDGIFKEVLRNRPDFRRKPWPTISNAAKDFVKKLLVKDPRARYTAAQALSHPWVKEGGAALEIPIDISVLSNMRQFVKYSRLKQFALRALASTLDEAELSDLKDQFDAIDVDKNGSISLEEMRQALAKDLPWKLKESRVLEILQAIDSNTDGLVDFTEFVAATLHVHQLEEHDSDRWQHRSQAAFEKFDLDKNGYITADELRMHTGLRGSIDPLLEEADIDKDGKISLPEFRKLLRTASIGSRTIMSPSHHNRKM 561
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed11g1212 561 Pfam Protein kinase domain 102 360 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aed11g1212 561 CDD STKc_CAMK 99 359 - -
Aed11g1212 561 Gene3D - 379 470 - -
Aed11g1212 561 PANTHER CALCIUM-DEPENDENT PROTEIN KINASE 28-LIKE 63 551 - -
Aed11g1212 561 ProSitePatterns EF-hand calcium-binding domain. 525 537 IPR018247 -
Aed11g1212 561 ProSiteProfiles Protein kinase domain profile. 100 360 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aed11g1212 561 Gene3D Transferase(Phosphotransferase) domain 1 186 378 - -
Aed11g1212 561 SUPERFAMILY Protein kinase-like (PK-like) 97 374 IPR011009 -
Aed11g1212 561 Gene3D Phosphorylase Kinase; domain 1 93 185 - -
Aed11g1212 561 MobiDBLite consensus disorder prediction 7 34 - -
Aed11g1212 561 ProSitePatterns EF-hand calcium-binding domain. 495 507 IPR018247 -
Aed11g1212 561 MobiDBLite consensus disorder prediction 54 77 - -
Aed11g1212 561 SMART efh_1 516 544 IPR002048 GO:0005509
Aed11g1212 561 SMART efh_1 407 435 IPR002048 GO:0005509
Aed11g1212 561 SMART efh_1 486 514 IPR002048 GO:0005509
Aed11g1212 561 SMART efh_1 444 472 IPR002048 GO:0005509
Aed11g1212 561 ProSiteProfiles EF-hand calcium-binding domain profile. 482 517 IPR002048 GO:0005509
Aed11g1212 561 MobiDBLite consensus disorder prediction 1 86 - -
Aed11g1212 561 ProSiteProfiles EF-hand calcium-binding domain profile. 403 438 IPR002048 GO:0005509
Aed11g1212 561 ProSitePatterns Protein kinases ATP-binding region signature. 106 129 IPR017441 GO:0005524
Aed11g1212 561 ProSitePatterns Serine/Threonine protein kinases active-site signature. 222 234 IPR008271 GO:0004672|GO:0006468
Aed11g1212 561 PANTHER SERINE/THREONINE-PROTEIN KINASE 63 551 - -
Aed11g1212 561 Gene3D - 386 540 - -
Aed11g1212 561 ProSitePatterns EF-hand calcium-binding domain. 453 465 IPR018247 -
Aed11g1212 561 Pfam EF-hand domain pair 489 541 IPR002048 GO:0005509
Aed11g1212 561 Pfam EF-hand domain pair 406 469 IPR002048 GO:0005509
Aed11g1212 561 SMART serkin_6 100 360 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aed11g1212 561 ProSitePatterns EF-hand calcium-binding domain. 416 428 IPR018247 -
Aed11g1212 561 ProSiteProfiles EF-hand calcium-binding domain profile. 440 475 IPR002048 GO:0005509
Aed11g1212 561 SUPERFAMILY EF-hand 389 543 IPR011992 -
Aed11g1212 561 ProSiteProfiles EF-hand calcium-binding domain profile. 520 547 IPR002048 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed11g1212 Aed-Chr11 17359760 17365772 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed11g1212 1 554 EF-hand Containing Proteins AT2G17890 74.735 0.0 853
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Aed11g1212 Pkinase 3.6e-68 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed11g1212 K13412 - gmx:100805954 982.63
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed11g1212 11 17359760 17365772 Aed11g1212 11 17359760 17365772 ECH