Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed11g1197 ATGTCAGAAAACAAAGACGAAATCTATTCTGAATGCTCAGCAGGCTCAACCTCTCCAATGGGTAGCAAGTGCAGATACCTGTTTCATAGATTATGCAGTTGTGCCACTCTTTCATGGAACAAAAGCACCACACCAAAAGGTCGAAGAATTTTCCACAGAGATGTTGAAAAAGAAGAATTCCAGTATGCTAGTACTCACTGTCTCTCATCCTACTATAGTGTCTTTGTGGTTCGACTAGCAATCATGGTGATGCTAGCCATCTTGATAGGGCTGCTCACTATACTGACATGGCATTTCACAAAGATTTATACGGCAAAATCACTTAGCAGTTTGGCATATGGTTTGCGTTATGAACTTCTGCAACGCCCCGTTTTGAGGATGTGGAGTATTTTAAACTCTACTTCTGAAATTACTACAGCTCAGCAGTTGTATGAAGCGATGAGGGCTGTAACATGGGCGTTATTTGCTAGTCGAAAAGCTCTAAACTCTATAACTATCAACTATAAGAACGGATTTGTTCATGCATTCCACAGAGATCTGAAGGACAACAACACATTTTACATCTATTCTGATCTTTCAAATTACTCCATGGGTGCTAGCAACTCTAATGAGATCAATTCCGTTTCAACGCATCGAGCTTGGGATGATAAAGGCCTTCGTGGTAACAATTCTGCAATCTGGTACCGTGAGCCACTTGACCCTGTGAGTGGTGAAAAGATTGGAAAAGCTATGAAAATTGCACCAGAAGACTTGATCAACATAGCTGGCCTTTCCCAAGTGCCTGATGGTGTAGCTTCATGGCACGTCGCCGTGAGCAAGTTCACAGATTCACCATTGCTTTCCGCAGCATTGCCAGTTTGGGACTCATCTAATAAGACCATTATGGCAGTTGTGGGGGTCACAACTGCGCTTTATAGTGTAGGACAGCTGATGAGAGAGCTAGTTGAGATGCACAGTGGCCATATGTATTTGACATCTCAAGAGGGTTATTTACTTGCAACTTCCACAAGTGCACCTCTACTGGCAACTTCAACAAAGCCTCCTAAGCTTAAGATGGCTGTTGACTGTGAAGTCAATGTAATTCGACTCGGAGCTGAGTGGTTGCAGAGAACTTATGGGAACAATTTTCCTCCAAGTCATGAGATTCATGAAGAAAATGTCAAGCTAGGCCACCAGAGATATTACATTGACTCATTCTTCCTAAATTTGAAGAGACTTCCTTTGGTAGGTGTGATCATCATACCAAGAAAGTATATTATGGGGCAGGTAGATGAAAGAGCCTTCAAAACGTTGGTTATTCTGATATCTGCATCATTATGTATTTTGGTCATTGGATGTGTATGCATTTTGATATTGACTAACGGAGTATCAAAGGAAATGAATCTAAGAGCAGAACTGATAAATCAACTGGAAGCAAGAAGAAAAGCTGAGGCATCTAGCAACTATAAAAGTCAATTCCTTGCAAACATGAGTCATGAACTGAGGACACCTATGGCAGCAGTAATTGGGTTGCTTGACATTCTCATATCAGATGACTGCCTCACAAATGAACAATATTCAACAGTTACTCAAATAAGAAAATGCTCAACTGCTCTGCTCCGTCTTCTTAATAACATCTTGGATCTCAGTAAGGTGGAATCTGGAAAACTGGTCCTAGAAGATGCAGAGTTTGACTTGGGAAGGGAACTTGAAGGGCTTGTAGATATGTTTTCTGTTCAGTGCATTAACCACAATGTGGAGACTGTCTTAGACTTATCTGATGATATGCCAAAGGTAGTTCGGGGTGATTCTGCTAGGGTGGTTCAAATATTTGCAAATTTGATCAACAATTCAATTAAGTTTACTCCATCGGGTCATATTATTCTGCGAGGATGGAGTGAAAACCACGCTTCCGTTGTTAGTCCAAATCGTCCTCTTGACCAGAAGAAATCACGGGGTTTACAAAAGTACAGAGAGAAGCCAAATGCAAACCATGCTAAGAGAACATCTATAAAAGATAACAAAGTGATACTTTGGTTTGAAGTTGATGACACAGGCTGCGGTATTGACCCAAGCAAGTGGGATTCTGTGTTTGAAAGCTTTGAGCAAGCTGATCCATCAACTACACGACTGCATGGAGGCACTGGTCTTGGTCTTTGCATTGTCAGAAACTTGGTTAACAAGATGGGTGGAGACATCAGGGTTGTCAGAAAGGAAGGGCCAGGAACACTGATGCGATTATGCTTGCTTCTCAGTGCGCCAATGGATGTCACAGAACAACAGTGTGCAGTAGATTTGACAGAAAATGGTTTAGTGGTACTGCTTGCACTGCATGGCAACATGAGTCGATTAATTACATCCAAGTGGCTACAGAAAAACGGGGTGTGCACAATGGAAGCATCTGACTGGAACGGACTAACTCAAATTTTGAGGGAACTCTTTCATGCAAGAAGTTCAGTCCATAATACTGACTTTGATGCACACTCTTCAGCAAAAGAGGAATTGAAGTCTAAACTACTCAACATACGAGATATGAGGAACCCGGTTTTTGTGATTGTTGTTGACATTGGACTGCTTGACTTGAGCACAGATATATGGAAGGAACAACTTAACTTCCTTCACAGATACTTTGGTAGAGCAAAGTTCGTATGGATGTTAAATCATGACACTTCCAATACTATAAAGATGGAGCTCCGTAGGAAAGGGCATGTACTTATGGTCAACAAACCCCTTTACAAAGCAAAAATGATTCATATCTTGGAAGCTGTCGTAAAGGAGAGAAATCTTGAGCTTCAAAAGAAAAACACTGTTGCTCCAAGGACCACAATGAAAGAGGGTGACTTGCACGAGTTTCTTGAGATTGATTCCACTCATTTTGATGGTGCTAGCTCTGATGATTCTGACATATCTGAAATAGGTGGTTCAGATCCTGTTAGTGCTAATGGAGATAAACCAGTTGAGAATCTAGCCAAATCTCATCCATCATCACCACACCAAGTTAGATTAACCAATGAAAATGAATATTTGGAAGAACATAATTTGAGGAAAGAAGATCAATCTTCTAGCCCCAGCTCCAATTCTGCCACTGAAGACAACCAACCTAAATCACAGTCCACCAAAGAATCACCATCCATTTCAACAGAAGATCAGGATGAAGATTCTGAAAGTGGGGAAACAAATAGGGCCAACAGCAGCTCAAGTAAAGCAGTAGTAGATGGAAAGAAATCTCTTGAGGGCCTAAAGATTTTGCTTGCAGAAGATACACCAGTACTTCAAAGAGTTGCTACCATTATGCTTGAAAAAATGGGAGCAGATGTTGTTGCTGTAGGTGATGGACAACAAGCAGTAGATGCTCTCAATTGCATGTTCACTGCTGAAGATTGTAGAAGGGAATCACTCCATCAGAAGGAAAGAAACACAAGATCTCAAACAGAGATTTTAACTTGCCGTCCATATGACTTGATCCTAATGGATTGTCAGATGCCAAAGATGGATGGATACGAGGCAACAAAAGCAATAAGGAAATCAGAAGTGGGAACGGAGATGCATATTCCCATAGTTGCTCTAACAGCACATGCAATGTCATGTGATGAAGCCAAATGCCTCGAGGTGGGCATGGATGCTTACTTAACAAAGCCAATTGACTTCAAAATGATGGTGTCCACCATTCTTTCACTCACTAAAACGACAACATCTTAA 3678 0.4127 MSENKDEIYSECSAGSTSPMGSKCRYLFHRLCSCATLSWNKSTTPKGRRIFHRDVEKEEFQYASTHCLSSYYSVFVVRLAIMVMLAILIGLLTILTWHFTKIYTAKSLSSLAYGLRYELLQRPVLRMWSILNSTSEITTAQQLYEAMRAVTWALFASRKALNSITINYKNGFVHAFHRDLKDNNTFYIYSDLSNYSMGASNSNEINSVSTHRAWDDKGLRGNNSAIWYREPLDPVSGEKIGKAMKIAPEDLINIAGLSQVPDGVASWHVAVSKFTDSPLLSAALPVWDSSNKTIMAVVGVTTALYSVGQLMRELVEMHSGHMYLTSQEGYLLATSTSAPLLATSTKPPKLKMAVDCEVNVIRLGAEWLQRTYGNNFPPSHEIHEENVKLGHQRYYIDSFFLNLKRLPLVGVIIIPRKYIMGQVDERAFKTLVILISASLCILVIGCVCILILTNGVSKEMNLRAELINQLEARRKAEASSNYKSQFLANMSHELRTPMAAVIGLLDILISDDCLTNEQYSTVTQIRKCSTALLRLLNNILDLSKVESGKLVLEDAEFDLGRELEGLVDMFSVQCINHNVETVLDLSDDMPKVVRGDSARVVQIFANLINNSIKFTPSGHIILRGWSENHASVVSPNRPLDQKKSRGLQKYREKPNANHAKRTSIKDNKVILWFEVDDTGCGIDPSKWDSVFESFEQADPSTTRLHGGTGLGLCIVRNLVNKMGGDIRVVRKEGPGTLMRLCLLLSAPMDVTEQQCAVDLTENGLVVLLALHGNMSRLITSKWLQKNGVCTMEASDWNGLTQILRELFHARSSVHNTDFDAHSSAKEELKSKLLNIRDMRNPVFVIVVDIGLLDLSTDIWKEQLNFLHRYFGRAKFVWMLNHDTSNTIKMELRRKGHVLMVNKPLYKAKMIHILEAVVKERNLELQKKNTVAPRTTMKEGDLHEFLEIDSTHFDGASSDDSDISEIGGSDPVSANGDKPVENLAKSHPSSPHQVRLTNENEYLEEHNLRKEDQSSSPSSNSATEDNQPKSQSTKESPSISTEDQDEDSESGETNRANSSSSKAVVDGKKSLEGLKILLAEDTPVLQRVATIMLEKMGADVVAVGDGQQAVDALNCMFTAEDCRRESLHQKERNTRSQTEILTCRPYDLILMDCQMPKMDGYEATKAIRKSEVGTEMHIPIVALTAHAMSCDEAKCLEVGMDAYLTKPIDFKMMVSTILSLTKTTTS 1225
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed11g1197 1225 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 470 549 IPR036097 GO:0000155|GO:0007165
Aed11g1197 1225 PRINTS Bacterial sensor protein C-terminal signature 706 724 IPR004358 GO:0016310|GO:0016772
Aed11g1197 1225 PRINTS Bacterial sensor protein C-terminal signature 671 685 IPR004358 GO:0016310|GO:0016772
Aed11g1197 1225 PRINTS Bacterial sensor protein C-terminal signature 689 699 IPR004358 GO:0016310|GO:0016772
Aed11g1197 1225 MobiDBLite consensus disorder prediction 642 659 - -
Aed11g1197 1225 Gene3D - 1051 1222 - -
Aed11g1197 1225 Gene3D - 470 549 - -
Aed11g1197 1225 SMART REC_2 1073 1216 IPR001789 GO:0000160
Aed11g1197 1225 ProSiteProfiles Response regulatory domain profile. 1074 1220 IPR001789 GO:0000160
Aed11g1197 1225 PANTHER OSMOSENSOR HISTIDINE KINASE 20 1221 - -
Aed11g1197 1225 SUPERFAMILY CheY-like 1071 1220 IPR011006 -
Aed11g1197 1225 CDD REC_hyHK_CKI1_RcsC-like 1075 1216 - -
Aed11g1197 1225 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 537 742 IPR036890 -
Aed11g1197 1225 Pfam Response regulator receiver domain 1075 1215 IPR001789 GO:0000160
Aed11g1197 1225 SMART HisKA_10 482 548 IPR003661 GO:0000155|GO:0007165
Aed11g1197 1225 MobiDBLite consensus disorder prediction 1012 1037 - -
Aed11g1197 1225 SMART HKATPase_4 595 746 IPR003594 -
Aed11g1197 1225 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 595 744 IPR003594 -
Aed11g1197 1225 PANTHER TWO-COMPONENT HISTIDINE KINASE 20 1221 - -
Aed11g1197 1225 MobiDBLite consensus disorder prediction 951 1064 - -
Aed11g1197 1225 Pfam His Kinase A (phospho-acceptor) domain 483 548 IPR003661 GO:0000155|GO:0007165
Aed11g1197 1225 CDD HisKA 483 544 IPR003661 GO:0000155|GO:0007165
Aed11g1197 1225 MobiDBLite consensus disorder prediction 633 659 - -
Aed11g1197 1225 ProSiteProfiles Histidine kinase domain profile. 489 746 IPR005467 -
Aed11g1197 1225 MobiDBLite consensus disorder prediction 997 1011 - -
Aed11g1197 1225 Gene3D - 550 747 IPR036890 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed11g1197 Aed-Chr11 17263197 17269487 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed11g1197 18 1221 Histidine Kinase Gene Family AT2G17820 64.136 0.0 1544
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Aed11g1197 HATPase_c 1.4e-22 CL0025
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed11g1197 - - gmx:100807543 2187.15
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed11g1197 11 17263197 17269487 Aed11g1197 11 17263197 17269487 ECH