Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed11g1183 ATGAATAAGAAAAAAAAAACGTTAAAAAAGCATAATAATCAAGCACTAGGTGCTACACTACAATCCTCCCTCAAAGAAATGAGATATGCTTCCCCACCAGTGAATCAGATGAGTCTCAAAGGCTTGGTATCACTTGTCATCAATTTAATTGGCCTAGCTGAGGAACAAAGGAACAATAATGATGATGCCCCTTTACCTTCTAATTACATGCTATCATCTGAGTCTGCATCAGCAGCAGCATCCAATTTTAATGAGGATAGTTGGTGTTGTGTGTGCTTGTCAAGGTTAAAGGCCAAAGATGAAATCCGTGTCCTTCCTTGCTCTCACAAATTCCATAAGATTTGTGTAAATAGTTGGCTTAAGGGTCGCCACAAAACATGTCCACTCTGCCGTTTCTCATTGGGAACTGAGGAGAAGTCTCATCATCATCATCGGTCCGAAATGTTCACTGAAGAGATGTTAATGTGGTTTTCTTCTTTTCATGTAGCTGTAATTTTGAATAATATATGTGATTTTAGCTCATTAGTGTGCTCAGGTTGTTACTCACATGTCCCCTGCGGCTGGACAAACAGAGATTTTATAGTTAGAAAAAGTGCTGCAAGAATTAAAGCTTATGCAGAGAAATGCAAACTTGACCATAAATCACTCACTATATCATGCTCTCATCATCAATGA 675 0.3852 MNKKKKTLKKHNNQALGATLQSSLKEMRYASPPVNQMSLKGLVSLVINLIGLAEEQRNNNDDAPLPSNYMLSSESASAAASNFNEDSWCCVCLSRLKAKDEIRVLPCSHKFHKICVNSWLKGRHKTCPLCRFSLGTEEKSHHHHRSEMFTEEMLMWFSSFHVAVILNNICDFSSLVCSGCYSHVPCGWTNRDFIVRKSAARIKAYAEKCKLDHKSLTISCSHHQ 224
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed11g1183 224 PANTHER TARGET OF ERK KINASE MPK-1 71 150 - -
Aed11g1183 224 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 52 136 IPR013083 -
Aed11g1183 224 SMART ring_2 89 130 IPR001841 -
Aed11g1183 224 PANTHER GB|AAF27103.1 71 150 - -
Aed11g1183 224 SUPERFAMILY RING/U-box 83 136 - -
Aed11g1183 224 ProSiteProfiles Zinc finger RING-type profile. 89 131 IPR001841 -
Aed11g1183 224 Pfam Ring finger domain 89 131 IPR001841 -
Aed11g1183 224 CDD mRING-H2-C3H2C2D_ZSWM2 89 131 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed11g1183 Aed-Chr11 17186986 17188459 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed11g1183 50 131 C3H Transcription Factor Family AT4G26580 39.759 3.96e-13 65.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed11g1183 - - gmx:100809233 204.912