Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed11g1177 ATGGATTTTGTGCCGAATCCGTGTCCTTTGCGTTCTTCTACGCTCGTGAATCTTCTCGAGAGGGTTAAACAGCTTGGTACCCTCGCCGTTTCTGCAGTCATTGGGAACATCTTCTCCGCGATCTTGACCTTCTGCTTCGCATTAGTGGGCACTTTGTTGGGGGCTCTAACTGGAGCTTTGATAGGACAAGAAACTGAGAGTGGCTTCATTCGAGGGGCTGCTGTTGGTGCCATTTCAGGAGCTGTTTTTTCCATTGAAGTGTTTGAATCCTCTCTTATTGACGTTATTGCCAGCTTACTGAGTGGGAGACTTGTGCGTGAGAGGATTGGTCCAGCCATGTTGAGTGCTGTTCAAAGTCAGATGGGTGCTGTTGAAACCAGCTTTGATGAGGTTCAAAACATCTTTGACACCGGTGGTGCCAAAGGTTTGTCTGGAGATTTGGTTGAAAAAATCCCCAAAATCAAAATTACAACTGACAACAATATTGATGCATCCGGCGATAGAGTTTCTTGTTCAGTCTGCCTGCAGGACTTTCAGCTTGGAGAGACAGTAAGAAGCTTACCTCATTGCCATCACATGTTTCACCTACCTTGCATAGATAAGTGGCTCTTCAGACATGGTTCTTGCCCATTATGCAGAAGGGATCTGTAA 651 0.4608 MDFVPNPCPLRSSTLVNLLERVKQLGTLAVSAVIGNIFSAILTFCFALVGTLLGALTGALIGQETESGFIRGAAVGAISGAVFSIEVFESSLIDVIASLLSGRLVRERIGPAMLSAVQSQMGAVETSFDEVQNIFDTGGAKGLSGDLVEKIPKIKITTDNNIDASGDRVSCSVCLQDFQLGETVRSLPHCHHMFHLPCIDKWLFRHGSCPLCRRDL 216
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed11g1177 216 SUPERFAMILY RING/U-box 158 216 - -
Aed11g1177 216 PANTHER NEP1-INTERACTING PROTEIN-LIKE 2 11 216 IPR044523 -
Aed11g1177 216 Pfam YMGG-like Gly-zipper 46 81 IPR027367 -
Aed11g1177 216 ProSiteProfiles Zinc finger RING-type profile. 171 213 IPR001841 -
Aed11g1177 216 CDD RING-H2_PA-TM-RING 171 213 - -
Aed11g1177 216 PANTHER NEP1-INTERACTING PROTEIN-LIKE 1 11 216 - -
Aed11g1177 216 SMART ring_2 171 212 IPR001841 -
Aed11g1177 216 Pfam Ring finger domain 170 213 IPR001841 -
Aed11g1177 216 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 132 216 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed11g1177 Aed-Chr11 17147749 17151439 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed11g1177 16 216 C3H Transcription Factor Family AT5G66070 70.968 4.15e-104 298
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed11g1177 - - gmx:100807641 394.43