Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed11g1169 ATGAAACTTAAGCTTGGAATCAGATCAATAGGTGAAGCAGGAAAACATGCCTTTAATCATAATCGGCAGATTATTCATCTTGGGAAACTGGGAAAAGTTGATGAGGCCATCGCAATCTTCTCCAACATGACCCACAAAAACCTTGTAACATACAATTCCATGATATCTGTGTTGGCAAAAAATGCTAGGATCACCAATGCTCGACAACTGTTTGATCAAATGTCCCATAGAAACCTTGTTTCTTGGAACACCATGATTGCTGGATATCTTCACAACAAGGCCAGGAAACTTTTTGACAGGATGCATAGTAAGAATGTGGTTTCTTGGAATGCAATGATTGCAGCCTATGTTCAAGACTTACAAGTTGATGAAGCTGTTAAGCTGTTCATGAAAATGCCACATAAAGATAGTGTATCATGGACTACAATAATTAATGGGTACATTCGAGTTGGTAAGCTTGATAAAGCACGTGAAGTTTACAATCAAATGCCTTGCAAAGACATCGCAGCGAAAACAACATTGATGTCTGGATTAATACAGAATGGAAGGATAGATGAGGCTAATCAAATGTTTAGTCGAATTGGTGCACGTGATGTTGTTTGTTGGAACAGCATGATTGCAGGCTATTCCCAGAGTGGAAGAATGGATGAAGCTCTCAATTTATTTAGACAACTGCCCATTAAGAACTCAGTTTCATGGAATACTATGATTTCTGGATATGCTCAGGCAGGACAAATGGATAGAGCAACAGAGATCTTTCAGGCAATGGGGGAGAAGAATATAGTTTCCTGGAATTCTCTTGTTGCAGGCTTTCTACAAAATAATCTATACTTGGATGCTCTTAAGAGTTTGGTTATGATGGGGCAGGAAGGAAAAAAACCTGATCAATCAACTTTTGCATGTGCCTTAAGTGCATGTGCTAATCTTGCTGCTTTGCAAGTAGGCAAGCAACTTCATGAATATATTATGAAGAGTGGTTATATGAATGATTTATTTGTTGGCAATGCCCTGATTGCCATGTATGCAAAATGTGGAAGGGTGCAAAGTGCTGAACAAGTGTTCAGAGATATTGAATGTGTTGATCTTATTTCCTGGAATTCCTTGATTTCGGGTTATGCTTTGAATGGATATGCAGACAAGGCATTTAAAGCCTTTGAACAGATGTTATCAGAGAGAGTGGTTCCTGATGAGGTTACCTTCATTGGGATGTTGTCAGCATGCAGTCATGCTGGTTTAGCAAATCAGGGATTGGATATTTTTAAATGCATGATTGAAGATTTTGCTATTGAACCATTGGCTGAACACTACAGCTGCCTTGTTGATTTGCTTGGCCGCATGGGCAGGCTAGAGAAAGCAATCGATATAGTGAGGGGGATGAAGGTGAAAGCAAATGCTGGATTATGGGGCTCACTGCTTGGGGCATGTCGTGTACACAAAAACCTTGAACTTGGCAGATTTGCTGCCAAGAGGCTTTTTGAACTTGAACCACATAATGCCTCCAATTACATTACCTTGTCAAACATGCATGCTGAGGCTGGCAGATGGGAAGAGGTTGAAAGATCTCTACTCTACACACTAAAACCTCCGGACCCTGTTAGACTGTTACGCTCTCCCGGGTGTAAATTCCAAACTATACACTCGCCGCAGGGGAACGCACCTCTCACTCCCATGGAGGACACCGGCGGCGACGACAATGGCGTTACCTATCTCCACGGCGACCTCGATTTGAAAATCATCGAGGCGCGCCGCTTGCCGAACATGGACATCTTCTCCGAGCGTGTCCGCCGCTGCGTCACCGCCTGCGACACTATCAATTTCCACTCCGAGCCTCCCGCCGACGCCTCCGGAGGCGGAAGCCGCAGCCAGCGTACGCGGACGCACAACCACCGGAGGATCATCACGAGCGACCCGTACGTCACCGTTGCGGTGCCGCAGGCCACGGTTGCGCGCACGCGCGTGCTGAAGAACTCGCAGAACCCTGTCTGGAAGGAACAGTTCCACATCCCGCTCGCGCATCCCGTGGTGGATTTGGAATTCCGCGTCAAGGACGACGACGTTTTCGGCGCGCAGACGATGGGAACCGTGAAGGTTCCGGCGCGGCGGATTGCCACCGGAAAAAAAATTTCCGAGTGGTTTCCGATTCTCGGGGCGAACGGGAAGCCGCCGAAGCCGGACACGGCGCTGCACGTGGAGATGACGTTCACGGCGGTGGCGGACAATTCACTTTACCAGCGAGGCATTGCGGGGGATCCGGAACACAAAGGCGCGAGGCACACGTATTTTCCGGTGAGGAAGGGGAGTTCGGTGAGGCTGTACCAAGACGCGCATTGTACGGAATCTGGTGAAGGGAAGTTACCGGAGATTGAGCTTGAGAATGGAACTGTTTATAGGCACGGGAAGTGTTGGGAGGATATTTGTTATGCTATATCTGAGGCTCATCACATGGTGTATTTGGTTGGTTGGTCGATTTATCACAAGGTGAGGATTGTTAGAGAGCCGACTAGGCCATTGCCGCGAGGTGGCGATTTGACTCTTGGTGAGTTGCTTAAGTATAAGTCTGAAGAAGGGGTGAGGGTTCTGTTACTGGTTTGGGATGATAAGACTTCACACGATAAAGTTTTCCTCAAGACGGTGAGAGTGGAGTCAAATGAGAAATGCCCTGTGTTTTGTGGCCTAAGCTCTAAACAGTGGGTTGTAGGAACGGTCTTCACACACCACCAAAAATGTGTGATAGTGGACACACAGGCTGCTGGTAATAACCGGAAGATAACTGCTTTTATAGGAGGTCTTGATCTATGTGATGGTCGCTATGACACACCTGAGCATCGTCTATTTCGTGATCTTGACACTGTATTTGATGGTGATTTCCACAATCCTACATTTCCTGATAAATCATCGGATTATTTTACTGTTCCAGAGGATGACCCTTTAGTATGGGTTTCTAGTGAAGATGATCCTGAAAACTGGCATGTTCAGATCTTCCGCTCCATTGACTCAGGATCCCTGAAAGGATTTCCCAAACGTGTTGATATTGCTCTGTCCCAGGGCCAGACAATCCAAATGATGTACGATGTTGTTGCTAGAGAATTGAAATCAATGCAACTTACTGATGTGAACCCGCAAGATTACCTCAATTTTTATTGCCTTGGTAATCGGGAACACTTTAATGAAGATAGTTCAAGCACAAATGGTGCACAGATTTATGGTTACAGAATGTCACTTTGGGGAGAGCATCTTGGCATGTTAGATGAAACTTTTGAAGAGCCAGAGAGATTGGAGTGTGTCCATAAAGTGAATAAGATTGCAGAAAATAACTGGAAATCATTTGTTTCTGAAGAATTCTCACTTTTGCAGGGACATCTTCTTAAGTATCCTGTACAGGTAGATTCCGATGGGAAGGTTAGATCCCTACCCGACTGTGAGAACTTCCCCGATGCCGGCGGTAAGATATTGGGGGCTCACTCCGCAACAATTCCAGATATCCTAACAACTTAA 3495 0.4569 MKLKLGIRSIGEAGKHAFNHNRQIIHLGKLGKVDEAIAIFSNMTHKNLVTYNSMISVLAKNARITNARQLFDQMSHRNLVSWNTMIAGYLHNKARKLFDRMHSKNVVSWNAMIAAYVQDLQVDEAVKLFMKMPHKDSVSWTTIINGYIRVGKLDKAREVYNQMPCKDIAAKTTLMSGLIQNGRIDEANQMFSRIGARDVVCWNSMIAGYSQSGRMDEALNLFRQLPIKNSVSWNTMISGYAQAGQMDRATEIFQAMGEKNIVSWNSLVAGFLQNNLYLDALKSLVMMGQEGKKPDQSTFACALSACANLAALQVGKQLHEYIMKSGYMNDLFVGNALIAMYAKCGRVQSAEQVFRDIECVDLISWNSLISGYALNGYADKAFKAFEQMLSERVVPDEVTFIGMLSACSHAGLANQGLDIFKCMIEDFAIEPLAEHYSCLVDLLGRMGRLEKAIDIVRGMKVKANAGLWGSLLGACRVHKNLELGRFAAKRLFELEPHNASNYITLSNMHAEAGRWEEVERSLLYTLKPPDPVRLLRSPGCKFQTIHSPQGNAPLTPMEDTGGDDNGVTYLHGDLDLKIIEARRLPNMDIFSERVRRCVTACDTINFHSEPPADASGGGSRSQRTRTHNHRRIITSDPYVTVAVPQATVARTRVLKNSQNPVWKEQFHIPLAHPVVDLEFRVKDDDVFGAQTMGTVKVPARRIATGKKISEWFPILGANGKPPKPDTALHVEMTFTAVADNSLYQRGIAGDPEHKGARHTYFPVRKGSSVRLYQDAHCTESGEGKLPEIELENGTVYRHGKCWEDICYAISEAHHMVYLVGWSIYHKVRIVREPTRPLPRGGDLTLGELLKYKSEEGVRVLLLVWDDKTSHDKVFLKTVRVESNEKCPVFCGLSSKQWVVGTVFTHHQKCVIVDTQAAGNNRKITAFIGGLDLCDGRYDTPEHRLFRDLDTVFDGDFHNPTFPDKSSDYFTVPEDDPLVWVSSEDDPENWHVQIFRSIDSGSLKGFPKRVDIALSQGQTIQMMYDVVARELKSMQLTDVNPQDYLNFYCLGNREHFNEDSSSTNGAQIYGYRMSLWGEHLGMLDETFEEPERLECVHKVNKIAENNWKSFVSEEFSLLQGHLLKYPVQVDSDGKVRSLPDCENFPDAGGKILGAHSATIPDILTT 1164
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed11g1169 1164 Pfam E motif 478 520 IPR046848 -
Aed11g1169 1164 CDD C2_plant_PLD 566 735 - -
Aed11g1169 1164 Gene3D Tetratricopeptide repeat domain 413 528 IPR011990 GO:0005515
Aed11g1169 1164 Gene3D Endonuclease Chain A 789 959 - -
Aed11g1169 1164 Pfam Phospholipase D Active site motif 901 936 IPR001736 GO:0003824
Aed11g1169 1164 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 198 228 IPR002885 -
Aed11g1169 1164 ProSiteProfiles C2 domain profile. 548 712 IPR000008 -
Aed11g1169 1164 Pfam Phospholipase D C terminal 1083 1153 IPR024632 -
Aed11g1169 1164 TIGRFAM PPR: pentatricopeptide repeat domain 231 262 IPR002885 -
Aed11g1169 1164 TIGRFAM PPR: pentatricopeptide repeat domain 200 225 IPR002885 -
Aed11g1169 1164 TIGRFAM PPR: pentatricopeptide repeat domain 436 460 IPR002885 -
Aed11g1169 1164 TIGRFAM PPR: pentatricopeptide repeat domain 138 168 IPR002885 -
Aed11g1169 1164 TIGRFAM PPR: pentatricopeptide repeat domain 363 397 IPR002885 -
Aed11g1169 1164 TIGRFAM PPR: pentatricopeptide repeat domain 49 79 IPR002885 -
Aed11g1169 1164 TIGRFAM PPR: pentatricopeptide repeat domain 107 135 IPR002885 -
Aed11g1169 1164 Pfam PPR repeat 47 75 IPR002885 -
Aed11g1169 1164 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 570 735 IPR035892 -
Aed11g1169 1164 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 47 81 IPR002885 -
Aed11g1169 1164 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 361 395 IPR002885 -
Aed11g1169 1164 PANTHER PHOSPHOLIPASE D DELTA 969 1012 - -
Aed11g1169 1164 PANTHER PHOSPHOLIPASE D DELTA 1063 1164 - -
Aed11g1169 1164 SUPERFAMILY TPR-like 115 258 IPR011990 GO:0005515
Aed11g1169 1164 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 901 936 IPR001736 GO:0003824
Aed11g1169 1164 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 136 170 IPR002885 -
Aed11g1169 1164 SUPERFAMILY TPR-like 212 520 IPR011990 GO:0005515
Aed11g1169 1164 Gene3D Tetratricopeptide repeat domain 166 227 IPR011990 GO:0005515
Aed11g1169 1164 Gene3D Tetratricopeptide repeat domain 15 102 IPR011990 GO:0005515
Aed11g1169 1164 Gene3D Tetratricopeptide repeat domain 228 311 IPR011990 GO:0005515
Aed11g1169 1164 Gene3D Tetratricopeptide repeat domain 312 412 IPR011990 GO:0005515
Aed11g1169 1164 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 105 135 IPR002885 -
Aed11g1169 1164 Gene3D Tetratricopeptide repeat domain 103 165 IPR011990 GO:0005515
Aed11g1169 1164 PANTHER PHOSPHOLIPASE D DELTA 1014 1058 - -
Aed11g1169 1164 PANTHER PHOSPHOLIPASE D DELTA 566 963 - -
Aed11g1169 1164 SMART C2_3c 573 711 IPR000008 -
Aed11g1169 1164 Pfam PPR repeat family 104 134 IPR002885 -
Aed11g1169 1164 Pfam PPR repeat family 361 408 IPR002885 -
Aed11g1169 1164 SUPERFAMILY Phospholipase D/nuclease 761 956 - -
Aed11g1169 1164 PANTHER PHOSPHOLIPASE D 1014 1058 IPR015679 -
Aed11g1169 1164 PANTHER PHOSPHOLIPASE D 566 963 IPR015679 -
Aed11g1169 1164 PANTHER PHOSPHOLIPASE D 1063 1164 IPR015679 -
Aed11g1169 1164 Pfam PPR repeat 138 167 IPR002885 -
Aed11g1169 1164 Pfam PPR repeat 335 357 IPR002885 -
Aed11g1169 1164 Pfam PPR repeat 435 461 IPR002885 -
Aed11g1169 1164 Pfam PPR repeat 172 194 IPR002885 -
Aed11g1169 1164 Pfam PPR repeat 262 291 IPR002885 -
Aed11g1169 1164 Pfam PPR repeat 200 225 IPR002885 -
Aed11g1169 1164 Pfam PPR repeat 231 261 IPR002885 -
Aed11g1169 1164 PANTHER PHOSPHOLIPASE D 969 1012 IPR015679 -
Aed11g1169 1164 Gene3D C2 domain 570 744 IPR035892 -
Aed11g1169 1164 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 229 263 IPR002885 -
Aed11g1169 1164 Pfam C2 domain 572 714 IPR000008 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed11g1169 Aed-Chr11 17097753 17108901 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed11g1169 567 962 Phospholipase D Gene Family (Wang group) AT4G35790 63.484 4.34e-176 532
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed11g1169 - - gmx:100814497 844.343