Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed11g1168 ATGATTGAATATTTCAGGAATTCAAGGTCTCCTTCCCCATGGAGGGCTCAGTCAAGGTCAAGGTCTAGATCTAGGCCTAGGTCTAGGTCCCGTTCAAGATCTTTTGAGAAACAAAGGCCCAGATCCCGGTCGAGAAGTCGTGGAAGATCAAGATCAAGAAGTAACGAAAGGACTGAGGATAGAAATGCTGGGACTACACTTTATGTGACTGGCCTATCTTCAAGGGTCACTGAGAGAGACCTAGAGGAGCATTTCTCTAAGGAGGGAAAGGTTGCTTCGTGTTTTCTTGTGGTGGAGCCCCGGACACGAATTTCTCGTGGTTTTGCTTTTATTACAATGGACACTGTTGACTATGCGAACCGTTGCATCAAATATCTCAATCAATCAGTTTTAGAGGGTCGCTATATCACTGTTGAGCGGTCACGAAGAAAGCGGGCAAGAACTCCTACACCTGGACACTATCTTGGCCTGAAAAGTACTAGAGACTATGGGCATCGTGGTGATCGTGGCGACCGTGGTGATCGTGGAAGGTATCGAGGAGGTGGATCTGGCCGTGATGATTATGGATATCGTGGTGAACGTGGAAGGTCTCCAAGGCGATCACCATATCGAGGTGGTAGAGATTATTCACCAAGGCACTCACCACCACCACCACCACCCCCATCTTATAGTGGTGGTGGAAGATCTAGAAGGGATAGGTCCAGGTCACCTCCTTATTCTCCATACGGCAGCCCGGATAGGAGGTATGCTAGGGGATCTAGGTGA 765 0.4876 MIEYFRNSRSPSPWRAQSRSRSRSRPRSRSRSRSFEKQRPRSRSRSRGRSRSRSNERTEDRNAGTTLYVTGLSSRVTERDLEEHFSKEGKVASCFLVVEPRTRISRGFAFITMDTVDYANRCIKYLNQSVLEGRYITVERSRRKRARTPTPGHYLGLKSTRDYGHRGDRGDRGDRGRYRGGGSGRDDYGYRGERGRSPRRSPYRGGRDYSPRHSPPPPPPPSYSGGGRSRRDRSRSPPYSPYGSPDRRYARGSR 254
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed11g1168 254 PANTHER RNA RECOGNITION MOTIF 5 250 - -
Aed11g1168 254 SUPERFAMILY RNA-binding domain, RBD 42 154 IPR035979 GO:0003676
Aed11g1168 254 PANTHER TRANSFORMER-2 SEX-DETERMINING PROTEIN-RELATED 5 250 - -
Aed11g1168 254 Gene3D - 7 149 IPR012677 -
Aed11g1168 254 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 65 143 IPR000504 GO:0003723
Aed11g1168 254 MobiDBLite consensus disorder prediction 141 254 - -
Aed11g1168 254 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 67 136 IPR000504 GO:0003723
Aed11g1168 254 SMART rrm1_1 66 139 IPR000504 GO:0003723
Aed11g1168 254 MobiDBLite consensus disorder prediction 159 207 - -
Aed11g1168 254 MobiDBLite consensus disorder prediction 1 71 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed11g1168 Aed-Chr11 17094096 17096186 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed11g1168 38 147 Eukaryotic Initiation Factors Gene Family AT1G49760 29.091 5.45e-09 54.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed11g1168 K12897 - gmx:100527350 239.195