Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed11g1145 ATGTTTTCAACAGCAAAAACACCATCCGAGGAAGAGAAAAAAAGATCAAATGGAAAGGATATTATTGAGGGTGGTGAAGGGGGAGTGGGAGAAGCAGTGAATGTGGCTAAGAAAAAGAAACTAACAGGTTCATCGTCTAGCCACAGTAGTTATTGTCGTGCAGATGAATGTGGTGTGGACTTGAGCATGGCCAAGAGTTACAACCGCCGTCACAAGGTTTGTGACAAACATGCTAAGGCTCCTGTCGTTTTACTTTCTAGCATTCGTCAGAGGTTCTGCCAACAATGTAGCAAGTTCCATGAACTTGTACAGTTTGACGACACCAAAAGAAGCTGCAGGAAAACACTGGCTGAGCATAATGAGCGTAGAAGAAAAGCTCGCTTATTAGGAAATGATCAGCATCAATCAAGTGATTAA 417 0.4269 MFSTAKTPSEEEKKRSNGKDIIEGGEGGVGEAVNVAKKKKLTGSSSSHSSYCRADECGVDLSMAKSYNRRHKVCDKHAKAPVVLLSSIRQRFCQQCSKFHELVQFDDTKRSCRKTLAEHNERRRKARLLGNDQHQSSD 138
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed11g1145 138 MobiDBLite consensus disorder prediction 7 21 - -
Aed11g1145 138 ProSiteProfiles Zinc finger SBP-type profile. 49 126 IPR004333 GO:0003677
Aed11g1145 138 Pfam SBP domain 52 125 IPR004333 GO:0003677
Aed11g1145 138 SUPERFAMILY SBT domain 51 127 IPR036893 GO:0003677|GO:0005634
Aed11g1145 138 Gene3D - 42 113 IPR036893 GO:0003677|GO:0005634
Aed11g1145 138 PANTHER - 9 126 - -
Aed11g1145 138 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 9 126 IPR044817 GO:0003677
Aed11g1145 138 MobiDBLite consensus disorder prediction 1 29 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed11g1145 Aed-Chr11 16951193 16951776 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed11g1145 36 126 SBP-box Gene Family AT2G33810 57.143 2.90e-32 109
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Aed11g1145 SBP 4.8e-30 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed11g1145 - - gmx:100820357 174.481