Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed11g1144 ATGGCAAAAACAGCATCTGAAGCAGAAATGGATAATGTAAGCGATGAGGAAGTGGGAGAAGAAGTGAATGGGGTTAATATAAGCATAAAGTTAGTGAGTGGTGAGAATGGTTCAAGAACAACCTCGTCATCTAGTTATTGTCAGGCCGATGAATGTGGTGCGGACTTGAGCATGGCCAAGAGTTACAACCGCCGTCACAAGGTTTGTGACAAACATGATAAGGCTCCTGTTGTTTTACTTTCTAGCATTCGACAGAGGTTCTGCCAACAATGTAGTAATGTGTGGTGTATGATTCCATCATGTTTTGGATTAAATGACACACGCAGGTTCCATGAACTTGCAGAGTTTGATGACACCAAAAGAAGTTGCAGGAAAACATTGGCTGGGCATAATGAGCGTAGAAGAAAATCTCGCATAGACATCATCTCAAGTAAACTGATTAACACCTCATCGTTACCACCAGTTTCAAACTTCAAGTTCTAG 483 0.4161 MAKTASEAEMDNVSDEEVGEEVNGVNISIKLVSGENGSRTTSSSSYCQADECGADLSMAKSYNRRHKVCDKHDKAPVVLLSSIRQRFCQQCSNVWCMIPSCFGLNDTRRFHELAEFDDTKRSCRKTLAGHNERRRKSRIDIISSKLINTSSLPPVSNFKF 160
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed11g1144 160 Pfam SBP domain 47 93 IPR004333 GO:0003677
Aed11g1144 160 Pfam SBP domain 108 136 IPR004333 GO:0003677
Aed11g1144 160 ProSiteProfiles Zinc finger SBP-type profile. 44 137 IPR004333 GO:0003677
Aed11g1144 160 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 12 137 IPR044817 GO:0003677
Aed11g1144 160 SUPERFAMILY SBT domain 46 142 IPR036893 GO:0003677|GO:0005634
Aed11g1144 160 Gene3D - 37 124 IPR036893 GO:0003677|GO:0005634
Aed11g1144 160 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 12 137 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed11g1144 Aed-Chr11 16948874 16949428 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed11g1144 39 140 SBP-box Gene Family AT2G33810 54.902 1.73e-32 110
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Aed11g1144 SBP 1.5e-15 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed11g1144 - - gmx:100820357 167.933
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed11g1144 11 16948874 16949428 Aed11g1144 11 16948874 16949428 ECH