Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed11g1137 ATGGGAGGTGATGCTGCCGCCGCTGAGAGTGCCACCACGGAGTCGAACACCGCAGATGGAGTCAGTATCAACATTCGTTGCTCTAATGGTTCTAAATTTACGGTTCAGATTGGCCTTGATTGCAGCGTCAGATCCTTCAAGGACGAGGTTGCTCACAACTGTGACATCCCCGCCGATCAACAGCGGCTGATTTACAAGGGTCGGATCCTCAAAGACGACCAAACTCTCCGAAGCTACGGTTTGGAGGCTGATCACACTGTTCATTTGGTTCGTGGTTTTGCTCCATCTAACACCACTGGTGGGACTAACAGTGGTGGTGGCAATACCACAACTGCTAATGCTAACACAAGAGGTGCTGGTGCTAATGAGACTGGGGGTTTAGGAGGGCCAGGATTTGGAGCTTCACTGTTTCCCGGACTTGGCGGTAACAATGGGATGGGGGGCAGTGGTCTTAACAGCTTATTTGGAGCGGGCTTGCCGGATCTTGAACAAATGCAGCAACCATTTTTGTCAAATCCCAATTTAATGAGAGATATAATGAACACACCTGCTATGCAGAATTTAATAAATAATCCAGAAATAGTGCGGAATCTTATCATGAATAACCCGCAGATGCAAGAGCTAATGGATAGGAACCCTGAACTTGCACACATACTTAATGATCCTAGCACTCTTCGTCAGACACTTGAAGCTACAAGGAACCCTGAGATCATGCGCGAAATGATGAGGAATACTGACAGAGCAATGAGCAACATTGAATCTTCTCCCGAGGGGTTCAACATGCTGAGGCGCATGTATGAAAATGTTCAAGAACCGTTTTTAAATGCCACTACAATGGCTGGTAACACAGGAAATGATGCTGCTGCAGTCAGAAACCAATCAACTAATCCCTCAACTACTAATTCTGAAGCAACTTCCCCTGTACCCAATACGAACCCACTTCCTAATCCTTGGTCCTCTACTACTGGAACTGGAGGAGGCCCAAATAACACTAGAAGGCCAACTACTACGAGTGGGGACGCTCGACAGCCGACACCCACTGGCCTAGGAGGGCTTGGACTACCAGATCTTGAAGGCATGTTGGGTGGGATGCCTGATGCTGCTATGTTGACCCAATTAATGCAAAATCCAGCTATTTCACAAATGATGCAAAGTATCCTCTCCAATCCACAGACTATGAGTCAGATTCTTGGGGTCAATAACGAGCAGCGTGGCATGCCTGATATAAATTCTCTAAGGGAGGTGATGCAAAACCCAGAGTTTGTACGCCTGTTCTCTTCACCTGAGACCCTTCAGCAACTCTTGTCTTTCCAGCAAGCTCTTCTGTCTCAGCTTGGTCAGCAACCATCAACACAGGAACCAGGTCAAACAGGTGGTGGCACGGGACCGTTGAACAACATGGGGTTGGAGATGTTATCAAGCATGTTTGGTGGACTTGGAGCTGGTAGCCTGGCTGTTCCCAACAGATCAAATGAGCCGCCGGAGCAATTGTATGCCACCCAACTTTCTCAGCTTCAAGAGATGGGGTTCTTTGACACGCAAGAGAACATAAGGGCTCTTATGGCTACATCAGGGAATGTTCATGCAGCAGTTGAGCGGCTTTTGGGAAACTCCGGACAGTAG 1623 0.4806 MGGDAAAAESATTESNTADGVSINIRCSNGSKFTVQIGLDCSVRSFKDEVAHNCDIPADQQRLIYKGRILKDDQTLRSYGLEADHTVHLVRGFAPSNTTGGTNSGGGNTTTANANTRGAGANETGGLGGPGFGASLFPGLGGNNGMGGSGLNSLFGAGLPDLEQMQQPFLSNPNLMRDIMNTPAMQNLINNPEIVRNLIMNNPQMQELMDRNPELAHILNDPSTLRQTLEATRNPEIMREMMRNTDRAMSNIESSPEGFNMLRRMYENVQEPFLNATTMAGNTGNDAAAVRNQSTNPSTTNSEATSPVPNTNPLPNPWSSTTGTGGGPNNTRRPTTTSGDARQPTPTGLGGLGLPDLEGMLGGMPDAAMLTQLMQNPAISQMMQSILSNPQTMSQILGVNNEQRGMPDINSLREVMQNPEFVRLFSSPETLQQLLSFQQALLSQLGQQPSTQEPGQTGGGTGPLNNMGLEMLSSMFGGLGAGSLAVPNRSNEPPEQLYATQLSQLQEMGFFDTQENIRALMATSGNVHAAVERLLGNSGQ 540
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed11g1137 540 MobiDBLite consensus disorder prediction 446 467 - -
Aed11g1137 540 SMART uba_6 498 536 IPR015940 -
Aed11g1137 540 Gene3D - 197 255 - -
Aed11g1137 540 CDD UBA_PLICs 498 536 - -
Aed11g1137 540 ProSiteProfiles Ubiquitin domain profile. 21 90 IPR000626 GO:0005515
Aed11g1137 540 MobiDBLite consensus disorder prediction 277 344 - -
Aed11g1137 540 MobiDBLite consensus disorder prediction 94 119 - -
Aed11g1137 540 PANTHER UBIQUITIN DOMAIN-CONTAINING PROTEIN DSK2A-RELATED 1 540 - -
Aed11g1137 540 SMART CBM 399 434 IPR006636 -
Aed11g1137 540 SMART CBM 202 241 IPR006636 -
Aed11g1137 540 SMART CBM 354 396 IPR006636 -
Aed11g1137 540 SMART CBM 148 189 IPR006636 -
Aed11g1137 540 Pfam Ubiquitin family 23 90 IPR000626 GO:0005515
Aed11g1137 540 MobiDBLite consensus disorder prediction 277 354 - -
Aed11g1137 540 SUPERFAMILY Ubiquitin-like 14 106 IPR029071 -
Aed11g1137 540 Pfam UBA/TS-N domain 498 534 IPR015940 -
Aed11g1137 540 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 492 537 IPR015940 -
Aed11g1137 540 MobiDBLite consensus disorder prediction 446 463 - -
Aed11g1137 540 Gene3D - 7 105 - -
Aed11g1137 540 SMART ubq_7 21 92 IPR000626 GO:0005515
Aed11g1137 540 Gene3D - 480 540 - -
Aed11g1137 540 SUPERFAMILY UBA-like 494 536 IPR009060 GO:0005515
Aed11g1137 540 PANTHER UBIQUILIN 1 540 - -
Aed11g1137 540 CDD Ubl_Dsk2p_like 21 93 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed11g1137 Aed-Chr11 16871223 16877285 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed11g1137 21 90 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 31.429 2.70e-07 48.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed11g1137 K04523 - gmx:100780421 842.417
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed11g1137 11 16871223 16877285 Aed11g1137 11 16871223 16877285 ECH
Aed11g1137 11 16871223 16877285 Aed7g1280 7 10485391 10493999 PCT