Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed11g1117 ATGTCGTGTTCTTCGTCATCGGGGTCGGAGGAAGACGATGAGGGATTCGACTCTTACCGGAAAGGAGGCTACCACGCCGTCAGAGTCGCCGATCAGTTCGGCGCCGGCAGGTACATAGCGCAGAGGAAGTTGGGCTGGGGCCAGTTCTCCACCGTGTGGCTCGCTTACGATACTAAAACTCAGTCATATGTTGCTCTCAAGATCCAGAAAAGTGCGGCCCAGTTTGTTCAGGCTGCCCTTCATGAGATAGATGTTCTTTCATCCATTGCAGACCATGACCTGTCAAAATCAAAATATGTCATTCAATTGATTGACAACTTTAAGCACACCGGTCCAAATGGGCAGCATCTTTGCATGGTCCTTGAGTTTCTTGGTGATAGCTTGCTGCGCTTGATCAGATATAACCATTACAAAGGAATTCCACTGAATAAAGTTAGAGAGATTTGCAAATGCGTTTTGATTGGTTTGGATTACTTGCATACTGATCTTGGTATAATTCACACTGATCTAAAACCTGAAAACATTCTTCTATGTTCAACCATTGATCCTGCAAAAGACCCTTTAAGATCTGAACTCTCCCCAGTTCTAGAGCGGCCCGAGGGAAACACAAATGGTGGAGTTACAAGTCTTATTGAGAAAAGGTTGAAAAGGAGAGCAAGGACAGCAGTTGCTAAGATATCTGGAAGAAGAGCGTCAATGGGAGGAACAGGAGATGTTGCAAAGACTGGTAGAAATATCGATGGGATTGATGTGAGATGCAAGATAGTAGATTTTGGAAATGCTTGTTGGGCTGATAAGCAGTTTGCAGAAGAAATACAGACAAGGCAGTACAGAGCACCTGAAGTTGTACTGAAGGCTGGCTATTCCTTCTCCGTCGATATGTGGTCTTTAGCTTGCATTGCTTTTGAACTTGCCACTGGAGATATGTTGTTTACACCCACGGGCGGACAAGGTTTTAGTGAGGATGAGGATCACCTTGCCCTGATGATGGAACTCCTTGGAAAGATGCCCCGGAAGATTGCTATTGGTGGAGCTCAATCTAAGGATTTCTTTGACAGGCATGGAGATCTAAAAAGGATTCGAAGGCTAAAACATTGTCCACTTGACAAATTGCTGACTGATAAATATAAATTTTCAGTGGATGATGCTCAAGAGTTTTCAGGATTTCTTTTACCACTCTTTGATTTTGCGCCAGAGAAGCGACCAACCGCTCGACAGTGCCTTCAACACCCATGGCTGAGCTGCACAGAATCTCCTCCAAATGAATCTGCTGTGGAAAAGGTGGATGTTGGGATGAGCAACCTTAAAATCAGTCATACATAA 1323 0.446 MSCSSSSGSEEDDEGFDSYRKGGYHAVRVADQFGAGRYIAQRKLGWGQFSTVWLAYDTKTQSYVALKIQKSAAQFVQAALHEIDVLSSIADHDLSKSKYVIQLIDNFKHTGPNGQHLCMVLEFLGDSLLRLIRYNHYKGIPLNKVREICKCVLIGLDYLHTDLGIIHTDLKPENILLCSTIDPAKDPLRSELSPVLERPEGNTNGGVTSLIEKRLKRRARTAVAKISGRRASMGGTGDVAKTGRNIDGIDVRCKIVDFGNACWADKQFAEEIQTRQYRAPEVVLKAGYSFSVDMWSLACIAFELATGDMLFTPTGGQGFSEDEDHLALMMELLGKMPRKIAIGGAQSKDFFDRHGDLKRIRRLKHCPLDKLLTDKYKFSVDDAQEFSGFLLPLFDFAPEKRPTARQCLQHPWLSCTESPPNESAVEKVDVGMSNLKISHT 440
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed11g1117 440 SUPERFAMILY Protein kinase-like (PK-like) 34 420 IPR011009 -
Aed11g1117 440 Gene3D Transferase(Phosphotransferase) domain 1 92 413 - -
Aed11g1117 440 ProSitePatterns Protein kinases ATP-binding region signature. 44 67 IPR017441 GO:0005524
Aed11g1117 440 ProSitePatterns Serine/Threonine protein kinases active-site signature. 165 177 IPR008271 GO:0004672|GO:0006468
Aed11g1117 440 SMART serkin_6 38 413 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aed11g1117 440 ProSiteProfiles Protein kinase domain profile. 38 413 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aed11g1117 440 CDD STKc_SRPK 27 413 - -
Aed11g1117 440 PANTHER SERINE/THREONINE KINASE FAMILY PROTEIN 5 437 - -
Aed11g1117 440 Gene3D Phosphorylase Kinase; domain 1 24 123 - -
Aed11g1117 440 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 5 437 - -
Aed11g1117 440 Pfam Protein kinase domain 39 178 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aed11g1117 440 Pfam Protein kinase domain 252 413 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed11g1117 Aed-Chr11 16739907 16744740 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed11g1117 4 414 EF-hand Containing Proteins AT5G22840 50.324 1.05e-163 470
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_SRPK Aed11g1117 Pkinase 1.2e-21 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed11g1117 K08832 - gmx:100793851 810.831
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed11g1117 11 16739907 16744740 Aed11g1117 11 16739907 16744740 ECH
Aed11g1117 11 16739907 16744740 Aed7g1296 7 10657105 10663584 PCT