Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed11g1113 ATGATTAAAGTTTTGTTCTTGGTTTTAATGGTTCTCTCCAATGGATTCTTTGCAAATGGGGATGGCGTGCATAATTCCAAAATACCAGATTTTGTAAATATTGGGGCTCTCTTCTCTTTCAATACTAGTGTTGGTAGAAGTATAAAAATTGCTTTAGAAGCTGCGATTGAAGATGTAAATTCTGACCCTACTATTCTTGGTCTAACTAAGCTAAACCTCTCACTGCAAGAAGATTCTAAGTATAGAGGTTTCCTGAGCATTTCTGAGGTTTTGCAGGTCATGGCAAGACGCACGGTGGCAATAATAGGCCCCCATACTTCTGTAACAGCTCATGTCATAACTCATATTGCAAATGAGCTTCAAGTTCCTCTGCTGTCATTTTCAGCTTTGGACCCTACCCTTTCTTCACTTCAATTCCCATTCTTCATTAGAACTTGTCACAGTGATCTTTATCAAATGGCTGCAATAGCAGACCTTGTTGACTACCATAATTGGAAAGATGTTATTGCTGTCTACATTGATGATGATAATGGGAGAAATGGAATTGGTGCATTAGGCGATAAACTTGCTGAGAGGCGTTGCAGGATATCATATAAAGCAGCTTTGAGCCCTGATGCATCTATGGAAGAGATTACTAATGTGCTTGTGCAGGTGGCTCTGGCAGAATCACGGGTAATAGTTGTTCATGCTAATACTATATTTGGCCCCAATGTGTTTACTGTTGCAAAGAATCTTGGGATGATGGGAACTGGATATGTCTGGATAGCCACTGCTTTTCTCTCTGCTCTGCTTGATATCAACGGTCCCCTCTCTTCAGATTTATTGGATGACATTCAAGGAGTTCTTACACCGCGAATGTACACGCCAGATTCAAAGCTCAAAAAGATGTTTGTTTCTAGGTGGAAAAACTTGACTAGTGAAAATGCTGCTAATGTCCACCTTGGATTGAGTTTTTTACCTCTCTTTGCATATGACACAGTTTATGTGCTTGCTCATGCACTTGATGCATTTTTCAAACAAGGTAACCAAGTTACATTCTCAACCGATTCAAAGCTATCTAGCATACATGGAGACAACCTGAATCTTGAAGCCTTGAAAATCTTCAATGAAGGAAATTTGTTACGCAGGAACATTTATGAGGTTAACATCACTGGTGTATCAGGTTCATTCAAGTATACATCTGACAGAAATCTTGTTAATCCTTCATATGAAATCATTAATGTCGTTGGAACTGGAACTCGGAGGATCGGTTATTGGTCTAATTCCTCTGGACTATCAGTTGTTCCTCCAGAACCTCTTTATTCCAAACCAGGCAATGTTTCCAGAGAAAATCGAAAGCTGTTCCCTGCAATTTGGCCTGGAAACACAGGCGACAAACCTCGTGGTTGGGTTTTTCCAAACAATGGAAGGCTCTTAAAGATTGGAGTACCAAAAGGTGTTAGTTACAAGGAATTTGTCTCGCAAGTAAAAGGCACTGATATGTTTGAGGGATTCTGCATTGATGTATTTCTTGCTGCAGTGAACCTGTTGTCTTATGCTGTCCCCTATAAGTTCATCCCATACGGGGATGGTAAGAACAATCCTAGTATGAATGAGCTTGTCCGCCTGATCACAACGGGTGAATTTGATGGTGCAGTAGGTGACATTGCAATCACTACAGAAAGAACAAGGATGGTGGATTTTACTCAGCCATATATTGAGTCGGGTCTAGTGGTAGTAGCACCGGTTAGGAAGGCAGAAACCAATGCTTTGGCCTTTTTGGCCCCTTTTACACCTAAGATGTGGTGTGTCACAGCTATCTTTTTCATATTAGTGGGAGCTGTTGTTTGGATTTTGGAGCATAGGGTGAATGATGAATTTAGGGGACCACCCAAAAAACAAGTAGTTACTGTTTTATGGTTTAGTTTTTCAACAATGTTCTTTTCCCACAGGGAAAATACAGTGAGCACACTTGGTCGCTTTGTGTTGATTATATGGTTATTTGTAGTTCTTATAATTAACTCGAGTTACACAGCAAGTCTAACCTCAATCCTCACAGTGCAACAGCTTTATTCGCCCATTAAAGGCATTGAAAGTTTAGTAATTGGCAAAGAGCCTATTGGTTACACGCAGAGTTCTTTTGCTAGAAACTATTTAGTTCAGGAAATTGGTATTGATGAGTCCAGGCTTGTTCCTCTAACAACACCAGAAGAAGCTGCTAAAGCACTGAGACAAGGTCCTGAAAATGGGGGTGTTGCTGCTTACATTGAAGAGCGTGCCTACACTGACATCTTCCTCTCCACCCGTTGTGATTTAACTGTTGTTGGTCAAGAGTTCACCAGAAACGGTTGGGGATTTGCCTTTCCACGAGACTCACCATTAGCAGTTGATCTGTCAACTGCCATATTGCAAATGATAGACAGTGGAGATTTACAAAGGATCCATGACAAATGGCTTTTGAGTAGTGCTTGCTTATCACAAGGTGCAAAGCTTGAAGTGGAAAGACTCCAACTTAAGAGCTTTTGGGGCCTCTATGCCATCTGTGGCCTTGCCTGCTTGCTTGCACTCTTCATATATCTTATACAGATTTGGAGGCAATACCACAAGCACTATGTCTCAGAGGAACTTGATTCCACTGATGGCCAAAACATAGTATCAAAATCTTCGCGTCTCAAGACTTTCCTTTCGTTCGCAGACGAAAAAGAAGAGACTGTTAGGAGCCGGTCCAAGAGAAGGAAAATGGAGAAGATCTCATACAGAAGCAGTGAAGGAAGCTCATCCATCAGCTCCAATAAGGGATATGCTTCACGCAGAAGTGAATGTGCTAGTGAAGTATGA 2817 0.4121 MIKVLFLVLMVLSNGFFANGDGVHNSKIPDFVNIGALFSFNTSVGRSIKIALEAAIEDVNSDPTILGLTKLNLSLQEDSKYRGFLSISEVLQVMARRTVAIIGPHTSVTAHVITHIANELQVPLLSFSALDPTLSSLQFPFFIRTCHSDLYQMAAIADLVDYHNWKDVIAVYIDDDNGRNGIGALGDKLAERRCRISYKAALSPDASMEEITNVLVQVALAESRVIVVHANTIFGPNVFTVAKNLGMMGTGYVWIATAFLSALLDINGPLSSDLLDDIQGVLTPRMYTPDSKLKKMFVSRWKNLTSENAANVHLGLSFLPLFAYDTVYVLAHALDAFFKQGNQVTFSTDSKLSSIHGDNLNLEALKIFNEGNLLRRNIYEVNITGVSGSFKYTSDRNLVNPSYEIINVVGTGTRRIGYWSNSSGLSVVPPEPLYSKPGNVSRENRKLFPAIWPGNTGDKPRGWVFPNNGRLLKIGVPKGVSYKEFVSQVKGTDMFEGFCIDVFLAAVNLLSYAVPYKFIPYGDGKNNPSMNELVRLITTGEFDGAVGDIAITTERTRMVDFTQPYIESGLVVVAPVRKAETNALAFLAPFTPKMWCVTAIFFILVGAVVWILEHRVNDEFRGPPKKQVVTVLWFSFSTMFFSHRENTVSTLGRFVLIIWLFVVLIINSSYTASLTSILTVQQLYSPIKGIESLVIGKEPIGYTQSSFARNYLVQEIGIDESRLVPLTTPEEAAKALRQGPENGGVAAYIEERAYTDIFLSTRCDLTVVGQEFTRNGWGFAFPRDSPLAVDLSTAILQMIDSGDLQRIHDKWLLSSACLSQGAKLEVERLQLKSFWGLYAICGLACLLALFIYLIQIWRQYHKHYVSEELDSTDGQNIVSKSSRLKTFLSFADEKEETVRSRSKRRKMEKISYRSSEGSSSISSNKGYASRRSECASEV 938
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed11g1113 938 Pfam Ligand-gated ion channel 813 845 IPR001320 GO:0015276|GO:0016020
Aed11g1113 938 Gene3D - 583 712 - -
Aed11g1113 938 MobiDBLite consensus disorder prediction 913 930 - -
Aed11g1113 938 MobiDBLite consensus disorder prediction 892 938 - -
Aed11g1113 938 Gene3D - 50 400 - -
Aed11g1113 938 CDD PBP1_GABAb_receptor_plant 33 429 IPR044440 -
Aed11g1113 938 Gene3D - 470 582 - -
Aed11g1113 938 SUPERFAMILY Periplasmic binding protein-like I 29 464 IPR028082 -
Aed11g1113 938 CDD GluR_Plant 472 812 - -
Aed11g1113 938 Gene3D - 148 425 - -
Aed11g1113 938 Pfam Receptor family ligand binding region 50 410 IPR001828 -
Aed11g1113 938 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 12 925 - -
Aed11g1113 938 PIRSF IGluLR_plant 1 937 IPR017103 -
Aed11g1113 938 SUPERFAMILY Periplasmic binding protein-like II 449 814 - -
Aed11g1113 938 PANTHER GLUTAMATE RECEPTOR 3.6 12 925 - -
Aed11g1113 938 Pfam Bacterial extracellular solute-binding proteins, family 3 493 812 IPR001638 -
Aed11g1113 938 SMART GluR_14 473 814 IPR001320 GO:0015276|GO:0016020
Aed11g1113 938 Gene3D - 759 819 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed11g1113 Aed-Chr11 16719012 16723640 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed11g1113 6 915 Ion Channels AT3G51480 57.300 0.0 1092
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed11g1113 K05387 - gmx:100793320 1704.88
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed11g1113 11 16719012 16723640 Aed11g1113 11 16719012 16723640 ECH
Aed11g1113 11 16719012 16723640 Aed7g1302 7 10723748 10728914 ECH
Aed11g1113 11 16719012 16723640 Aed7g1302 7 10723748 10728914 PCT