Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed11g1109 ATGACGCGCGCGTTTAGAATTCTCAGGTCCGCGGACAACGCTACGGCCGTGGCAGCGGCGGCGCCGCCGCCGGAGGCGGTGGCGCTGGAGTCCGACTTCGTGGTGATTCTCGCGGCGCTTCTCTGCGCGCTCATCTGCGTGGTGGGGCTCGTGGCGGTGGCGCGGTGCGCGTGGCTCCGGCGAGGCACCGGCGGCGGAAACTCTCCCCATCAGGCGCTGGCGAACAAGGGACTGAAGAAGAAGGTGCTGCAGTCGCTGCCGAAGTTCGCGTACGTGGACAGCAACTCGAGCAAGTGGGTGGCGACGTCGGAATGCGTGATTTGCCTCTCGGAGTTCGCCGCCGGCGACGAGATCCGCGTGCTGCCGCAGTGCGGCCACGGCTTCCACGTGCCCTGCATCGACACGTGGCTCGGCTCGCACTCCTCGTGCCCCTCCTGTCGGCAGGTTCTGGCGGTGGCCAGGTGTCAGAAGTGCGGCAGACTGTACTACGAAAGAAATGATTGTGTAAGAATGAAAAGTGAAAACCTCGGGCTTTCTTAA 540 0.6444 MTRAFRILRSADNATAVAAAAPPPEAVALESDFVVILAALLCALICVVGLVAVARCAWLRRGTGGGNSPHQALANKGLKKKVLQSLPKFAYVDSNSSKWVATSECVICLSEFAAGDEIRVLPQCGHGFHVPCIDTWLGSHSSCPSCRQVLAVARCQKCGRLYYERNDCVRMKSENLGLS 179
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed11g1109 179 SMART ring_2 105 146 IPR001841 -
Aed11g1109 179 SUPERFAMILY RING/U-box 83 152 - -
Aed11g1109 179 CDD RING-H2_PA-TM-RING 104 147 - -
Aed11g1109 179 Pfam Ring finger domain 104 147 IPR001841 -
Aed11g1109 179 ProSiteProfiles Zinc finger RING-type profile. 105 147 IPR001841 -
Aed11g1109 179 PANTHER RING-H2 FINGER PROTEIN ATL61-RELATED-RELATED 1 163 - -
Aed11g1109 179 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL44-RELATED 1 163 - -
Aed11g1109 179 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 66 154 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed11g1109 Aed-Chr11 16677568 16678614 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed11g1109 5 158 C3H Transcription Factor Family AT1G76410 62.264 1.93e-62 189
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed11g1109 - - gmx:100787383 281.182
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed11g1109 11 16677568 16678614 Aed11g1109 11 16677568 16678614 ECH
Aed11g1109 11 16677568 16678614 Aed7g1308 7 10828908 10829510 PCT