Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed11g1099 ATGAGTGATGCAAAAGAAAACGAGGAAGCTGGCCACGGCGTGCCCTCGGTCGTGGAAGATAACCAGCAGTTGGTTGATGCAAAGGTTCAAGATCAACCTGAAGCTGCCTCTGCTCCTGTTCCAGTAGAGGAAAATTCAAATCATGTTGAAAATACGAAGGAAGAGCCACCTCTTGAGGACAAAAATGTAGAATTAGAGGCTGTTTCAGAGGGAATTCCACAAGAGGATGTTCAAAATACTCTTCTCTCTGTCCCAGTAGGGGCTGATGCTCAGATTTTGGGTAGGACTGAGTCAGAAGAAGCTTCTGGTGCGAAGGTGGAAGCTGATGAATTTCCCCAGAGTAATAAAGAGGCTGAGAATAATGATGATATTCATCAAAATAATAATGGCGATGTTGAGATGGCTGTGGAAGTGAAGCCTGAAGCCTGTGGCATGGCTGATAGTAAAACGAGTGATAATGGTGACCCTGTGCCTGCAAGTCATAATAATAATAGCGATGTTGAGATGGCTGTGGAAGTGAAGCCTGAAGCCTGTGGAATGGCTGATAGTAAAACGTGTGATAATGGTGACCCTGTGCCTGCAAGTCATAATAAGCCTGCTACGCCACAACCTGCTCCTGCTGATACAAACACTGAAATTATGAATGTATTAGAAGTTGAGAATAAGGCTGATGAAAAGCAAGCTACCGAACCCGCAGATAATGGGAATTCAAACTCAAAGCACATGCTTTTCTTAGATGCTGACCATTCGTATGATGGTAATGAGTCAGGAACAGAGGAGGAGCAGTCAGCATTTATGAAGGAGCTTGAAAACTTCTTTAGGGAGAGAAGCATGGAATTCAAACCTCCCAAGTTCTATGGAGAAGGACTAAATTGCCTTAAGCTGTGGAGAGCTGTAACGAGATTGGGTGGCTATGACAAGGTGACTTCATGTAAGTTATGGCGGCAAGTGGGAGAGTCTTTCAAACCTCCGAAGACATGCACCACTGTCTCATGGACATTTCGGGGGTTTTATGAGAAGGCACTTCTTGATTATGAAAGACATAAAATACAAGGTGGTGAGCTGAATGTGCCTATTGCTTCTCATCCAGAGCCTATAAATATTGAAAATCAGGCTTCAGCATCAGGTAGAGCTCGGAGAGATGCTGCAGCACGAGCTATGCAAGGTTGGCACTCACAACGTCTCCTAGGCAATGGTGAAGTTAGTGACCCTATTATTAAGGATAGGAATTCTTTGTCTGTGCAAAAGCGTGAAAAGCAGCTTAAAAGCATCAATTTACAAAAACGTAAGAAACCATCTTCACCTTACATGGATAATGCAGTCAAAGCTGCACGCAGTAAACCATCTAAACCACAATTGGACACAACTGTGATTGATATTGGACCTCCTGCTGATTGGGTAAAAGTCAATGTACAAAAAACTAAAGATTGTTTTGAGGTATATGCTTTAGTTCCTGGCCTTCTGCGGGAAGAGGTCCGTGTACAGTCAGACCCAGCTGGACGCCTAGTCATAAGTGGTGAGCCTGAGCATCCCAACAATCCTTGGGGTGTGACACCTTTCAAAAAGGTTGTCAGCTTGCCTTCAAGAATTGATCCTCATCAGACGTCTGCGGTGGTGACTCTGCATGGCCAGTTGTTTGTTCGTGTCCCATTTGAACAATCAGAATAG 1668 0.4424 MSDAKENEEAGHGVPSVVEDNQQLVDAKVQDQPEAASAPVPVEENSNHVENTKEEPPLEDKNVELEAVSEGIPQEDVQNTLLSVPVGADAQILGRTESEEASGAKVEADEFPQSNKEAENNDDIHQNNNGDVEMAVEVKPEACGMADSKTSDNGDPVPASHNNNSDVEMAVEVKPEACGMADSKTCDNGDPVPASHNKPATPQPAPADTNTEIMNVLEVENKADEKQATEPADNGNSNSKHMLFLDADHSYDGNESGTEEEQSAFMKELENFFRERSMEFKPPKFYGEGLNCLKLWRAVTRLGGYDKVTSCKLWRQVGESFKPPKTCTTVSWTFRGFYEKALLDYERHKIQGGELNVPIASHPEPINIENQASASGRARRDAAARAMQGWHSQRLLGNGEVSDPIIKDRNSLSVQKREKQLKSINLQKRKKPSSPYMDNAVKAARSKPSKPQLDTTVIDIGPPADWVKVNVQKTKDCFEVYALVPGLLREEVRVQSDPAGRLVISGEPEHPNNPWGVTPFKKVVSLPSRIDPHQTSAVVTLHGQLFVRVPFEQSE 555
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed11g1099 555 MobiDBLite consensus disorder prediction 180 208 - -
Aed11g1099 555 Pfam Hsp20/alpha crystallin family 472 554 IPR002068 -
Aed11g1099 555 SMART bright_3 260 351 IPR001606 GO:0003677
Aed11g1099 555 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN 6-LIKE 22 554 - -
Aed11g1099 555 CDD ACD_sHsps-like 470 550 - -
Aed11g1099 555 ProSiteProfiles ARID domain profile. 259 350 IPR001606 GO:0003677
Aed11g1099 555 MobiDBLite consensus disorder prediction 100 126 - -
Aed11g1099 555 SUPERFAMILY ARID-like 254 362 IPR036431 GO:0003677
Aed11g1099 555 Gene3D - 259 356 IPR036431 GO:0003677
Aed11g1099 555 MobiDBLite consensus disorder prediction 1 166 - -
Aed11g1099 555 Gene3D - 457 555 IPR008978 -
Aed11g1099 555 CDD ARID 261 346 - -
Aed11g1099 555 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN ARID DOMAIN- CONTAINING PROTEIN DEAD RINGER PROTEIN B-CELL REGULATOR OF IGH TRANSCRIPTION BRIGHT 22 554 IPR045147 GO:0006357
Aed11g1099 555 SUPERFAMILY HSP20-like chaperones 464 551 IPR008978 -
Aed11g1099 555 SMART ARID_2 256 346 - -
Aed11g1099 555 MobiDBLite consensus disorder prediction 47 66 - -
Aed11g1099 555 Pfam ARID/BRIGHT DNA binding domain 262 346 IPR001606 GO:0003677
Aed11g1099 555 ProSiteProfiles Small heat shock protein (sHSP) domain profile. 455 555 IPR002068 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed11g1099 Aed-Chr11 16597583 16603401 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed11g1099 240 553 ARID Transcription Factor Family AT1G76510 63.323 2.97e-132 390
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Aed11g1099 HSP20 1.6e-05 CL0190
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed11g1099 - - gmx:100791081 959.903
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed11g1099 11 16597583 16603401 Aed11g1099 11 16597583 16603401 ECH
Aed11g1099 11 16597583 16603401 Aed7g1320 7 10941696 10950659 PCT