Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed11g1097 ATGGAGTTTGAGCCTTTGAGTCTAAGCAACGAGGTTATTGAATTTGATATGATTGACGTGGAGCACCCTGTTGAAGATGATGAGGACCTTGTTAATATTGATAATGGTCCTGCCGCTGCTTTTACTGTTCTAGCTGCTGGAGGGGACACTGATCTTGAACCTTGTCAAGGTATGGAATTTGAATCCGAAGAGGCTGCGAAGGCCTTTTATAATTCCTATGCTCGCCGTGTTGGCTTTAGTACACGGGTGAGCATGTCGCGACGCTCCAGGCGCGATGGTTCTATAATTCAGAGGTCTTTTGTGTGTGCCAAGGAAGGTTTTCGTGTGGAGAGGGATAAGCATTTGGTTGATGGCAGAGCCAAGCGGCCTCGTGCTGAAACCCGTGTTGGTTGCAAGGCCATGTTGCTTGTGAAAATTCAAGATTCTGGCAGATGGGTTGTTTCTTCTTTTCTCAAGGAACATAACCATGAATTGGTTCCTCCTGACAAGGTGCATTGCCTTCGCTCTCACCGCCATGTTTCAGGTCCAGCTAAGTCATTGATTGATACTTTTCAGGGTGCCGGAATGGGGCCTAGTGGAATAATGTCTGCACTAATCAAAGAATATGGTGGAATTAGCAATATCGGTTTCACTGAGCGTGACTGTAGAAATTATATGAGCAGCAGTAAGCAAAGGACCCTTGGAGGTGACCCTCAAATCCTTTTGGATTACTTGAAGGGTAAACAAGCAGAGAATCCTTCATTTTTCTATGCTGTACAAAGTGATGAAGATCATTGCATGAATAATATCTTCTGGGTTGATTCCAAGGCCAGGACTAACTACAGTTACTTTGGTGACACTGTCACTGTTGACACAACATATAGGTCAAACCGCTATAGATTGCCTTTTGCACCTTTCACTGGTGTAAATCATCATGGACAGCCTGTATTATTTGGTTGTGCTCTCCTGGTAAATGAATCTGAGGCATCTTTTGTCTGGCTGTTCAAAACCTGGTTTGAAGCAATGGCTGGCCAACTTCCAGTTTCAATTACTACTGATCATGATAGGGTGATTCGTGCAGCCATCAACCAGGTCTTTCCTGGTACCCGTCACCGATTTTGTAAGTGGCACATTTTTAAAGAGTGCCAAGAGATGTTGTCACATGTGCTCTCTGAACATCATAATTTTGAAGCTGACCTCCATAAATGTGTTAACCTGACAGAGTCCATTGAGGAGTTTGAGTCTTGTTGGTCCTCCCTAATTGATAGGTATGATCTCAGAGAACAGGAATGGCTAAAATCAATTTATGGTGATAGGCGGCAATGGGTACCAGTGTACTTGAGGGACACATTTTTTGCAGAAATGTCAATAACACAGCGAAGTGATAGCATAAACTCTTACTTTGATGGATATATCAATGCATCAACAACTCTTCAGGTTTTTTTCAAGCAGTATGAGAAGGCTCTGGAGAGCCGTTATGAAAAGGAAGTCAAAGCTGATTATGACACGATTAACACTACTCCAGTTCTGAAGACTCCATCACCTATGGAGAAACAGACAGCTGGAGTTTACACAAGGAGTTTGTTTATCAAATTTCAAGAAGAGTTGGTTGAGACATTAACATTCTTGGCAAACAAAGTAGATGAGGAAGAAATGAATATCGAGTATAGAGTAGCCAAATTTGGGGAAATTCACAAGGCCTACTTTGTCAGATTTAACTCTTTTGAAATGAAAGCTACTTGTAGCTGCCAGATGTTTGAGTTTTGTGGTCTAGTTTGTAGACATATATTGACTGTTTTTAGGGTGACAAATCTTCTTACTTTACCATCTCATTATATTTTAAAAAGATGGAGTAGGAATGCTAGAAGTGGAGTCATGTTGGATGAACGTGCTACTAATTTGTCAAATGGAGGCCAAGAATCCCTGACTATCCGATACAATAACCTTCGTCATGAGGCCCTTAAGTATGTTGATGAGGGAGTAAACTCTCTGAAAGTTTATGATGTGGCAATGAGTGCACTTCAGGAGGCTGCAAATAAAGTGGCACTTGCAACAAAAAATGGTGGAAGACAACCTATTTTAAATGGAACCTGTGAAGAAGACCTTCATCAGAGCAATGAAGCAACTACAAGTTGCAGTGATCCTCCGTTTGGTTCACAACAATCTTCATACAAGGATGACCAAGACAGAACAATTGAGAAGCTGACGCGGCAGCTTTACAGAGCTCGAAGGAAGTGTGAAGTTTATAGGTCCAATTTGCTTTCGATTTTAAAAGATTTTGAAGAGCAGAAGCTAAAATTATCAGTCAAAGTCCAAAATATTAAGTTAGAAATGAAAGATTGA 2322 0.4139 MEFEPLSLSNEVIEFDMIDVEHPVEDDEDLVNIDNGPAAAFTVLAAGGDTDLEPCQGMEFESEEAAKAFYNSYARRVGFSTRVSMSRRSRRDGSIIQRSFVCAKEGFRVERDKHLVDGRAKRPRAETRVGCKAMLLVKIQDSGRWVVSSFLKEHNHELVPPDKVHCLRSHRHVSGPAKSLIDTFQGAGMGPSGIMSALIKEYGGISNIGFTERDCRNYMSSSKQRTLGGDPQILLDYLKGKQAENPSFFYAVQSDEDHCMNNIFWVDSKARTNYSYFGDTVTVDTTYRSNRYRLPFAPFTGVNHHGQPVLFGCALLVNESEASFVWLFKTWFEAMAGQLPVSITTDHDRVIRAAINQVFPGTRHRFCKWHIFKECQEMLSHVLSEHHNFEADLHKCVNLTESIEEFESCWSSLIDRYDLREQEWLKSIYGDRRQWVPVYLRDTFFAEMSITQRSDSINSYFDGYINASTTLQVFFKQYEKALESRYEKEVKADYDTINTTPVLKTPSPMEKQTAGVYTRSLFIKFQEELVETLTFLANKVDEEEMNIEYRVAKFGEIHKAYFVRFNSFEMKATCSCQMFEFCGLVCRHILTVFRVTNLLTLPSHYILKRWSRNARSGVMLDERATNLSNGGQESLTIRYNNLRHEALKYVDEGVNSLKVYDVAMSALQEAANKVALATKNGGRQPILNGTCEEDLHQSNEATTSCSDPPFGSQQSSYKDDQDRTIEKLTRQLYRARRKCEVYRSNLLSILKDFEEQKLKLSVKVQNIKLEMKD 773
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed11g1097 773 Coils Coil 718 745 - -
Aed11g1097 773 MobiDBLite consensus disorder prediction 698 723 - -
Aed11g1097 773 MobiDBLite consensus disorder prediction 698 718 - -
Aed11g1097 773 Pfam MULE transposase domain 281 373 IPR018289 -
Aed11g1097 773 SMART 26again6 572 599 IPR006564 GO:0008270
Aed11g1097 773 Coils Coil 750 770 - -
Aed11g1097 773 Pfam SWIM zinc finger 569 595 IPR007527 GO:0008270
Aed11g1097 773 PANTHER PROTEIN FAR1-RELATED SEQUENCE 5-LIKE 30 747 - -
Aed11g1097 773 Pfam FAR1 DNA-binding domain 69 160 IPR004330 -
Aed11g1097 773 ProSiteProfiles Zinc finger SWIM-type profile. 561 597 IPR007527 GO:0008270
Aed11g1097 773 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 30 747 IPR031052 GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed11g1097 Aed-Chr11 16582338 16588102 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Aed11g1097 MULE 2e-28 CL0219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed11g1097 - - gmx:100782414 1400.19