Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed11g1082 ATGCCACAGAACTGCATAGCACCAAAACCAGAATATTGCAATAGTAGTGATCACTCTGTGGAAGGACCCCCAGAGATGACTGAGCCACATAACTCAACTGTTCTTCCCTATCCCATGCAAACCAATGAACAACAACAACAACAACCACAACCTTTCCCAAAACTCATTATGTATCCCATAACTCTGAAGTTTGATGAGTTGGTGTACAAAGTTAAACTAGAGGAGAAAGGAGGGTGCTGGGGAAGTACATGGACTTGCAAGGAGAAGACCATACTGAATGGAATCACTGGAGTGGTGTGTCCAGGAGAAATACTAGCCATGTTGGGGCCATCAGGCAGTGGCAAAACCACACTTCTCACAGCACTAGGAGGCCGGCTCAGCGGCAAACTCTCTGGTAAGATCACGTACAACGGCCAACCTTTCTCCGGTGCCATGAAGAGGAGAACAGGCTTTGTGGCTCAGGATGATGTGCTCTACCCTCACCTCACTGTCACCGAAACACTAGTCTTCACTGCACTCCTAAGGCTTCCCAACAGCTTGACACGAGACGAAAAGGTTCAGCATGTTGAGAGAGTGATCACTGAGCTAGGACTAACTCGTTGCAGGAGCAGCATGATAGGAGGACCACTCTTCAGAGGAATATCGGGTGGAGAGAAAAAGAGAGTGAGCATAGGCCAAGAAATGCTCATAAACCCAAGCCTCCTGTTGCTGGATGAGCCTACTTCAGGTTTGGATTCCACAACAGCACAAAGGATCCTTAACACAATCAAACGGCTAGCTAGTGGGGGCAGAACTGTTGTCACCACTATTCACCAACCCTCTAGTAGGCTTTACTACATGTTTGATAAGGTGGTCTTGCTCTCTGAAGGCTGCCCCATCTATTATGGTCCTGCTTCCACTGCCTTGGACTACTTCTCTTCTGTTGGCTTTTCCACATCTGTGACTGTCAATCCTGCTGATCTCTTGCTTGATCTTGCCAATGGGATTGCCCCGGATTCCAAGAATGCAACTGAACAAAGTGAGGGACTGGAACAGGAGAGAAAGCAGTTGAGAGAATCTCTCATCTCTGCTTATGAGAGGAATATAGCTACAAGGCTGAAAGCTGAGGTTTGCAGCCTGGAAGTGAACTACAATATCACAAAAGATGCTTGTGCAAGAAATTCGATAAAGCCAGAACAATGGTGCACGAGCTGGTGGCATCAGTTCAAAGTACTGTTACAAAGGGGAGTGAGGGAGCGAAGGTATGAAGCCTTCAACAGGCTGAGAATATTCCAAGTTGTAAGTGTCGCTTTTCTTGGTGGACTATTGTGGTGGCATACTCCAGAGTCACACATTGAGGACCGGATTGCCTTGCTCTTTTTCTTTTCTGTTTTCTGGGGATTCTACCCTCTCTACAATGCCGTTTTCACATTCCCTCAAGAGAGGAGAATGCTGATCAAGGAACGGTCTTCCGGAATGTACCGGCTTTCTTCCTACTTTCTAGCTAGAACAATAGGAGACTTGCCCCTGGAGCTTGCACTTCCAACTGCATTTGTCATCATAATCTATTGGATGGGAGGGCTAAAACCTGATCCTGTGACTTTTATCCTTTCTCTTCTTGTGGTTCTTTACAGTGTTGTTGTCTCTCAAAGCCTTGGCTTAGCATTTGGTGCCATTTTGATGGAGATTAAACAGGCAACTACTCTAGCTTCTGTGACAACCCTTGTGTTTCTCATTGCTGGAGGGTACTATATACAACAGATTCCTCCATTCATAGTGTGGCTCAAGTACTTGAGCTACAGCTACTACTGTTACAAGCTGCTTTTAGGTGTCCAGTACAATGAAAATGATTATTATGAATGCTCAAAGGGGGAGCTGTGCAAAGTTGCAGACTTTCCTCCTATCAAATCAATGGGCTTGAATCATTTGTGGGTTGATGTGTGCATTATGGCCATGATGTTGGTGGGTTATCGACTCGTTGCTTATTTAGCACTGCATAGAGTTAGGTAG 1989 0.459 MPQNCIAPKPEYCNSSDHSVEGPPEMTEPHNSTVLPYPMQTNEQQQQQPQPFPKLIMYPITLKFDELVYKVKLEEKGGCWGSTWTCKEKTILNGITGVVCPGEILAMLGPSGSGKTTLLTALGGRLSGKLSGKITYNGQPFSGAMKRRTGFVAQDDVLYPHLTVTETLVFTALLRLPNSLTRDEKVQHVERVITELGLTRCRSSMIGGPLFRGISGGEKKRVSIGQEMLINPSLLLLDEPTSGLDSTTAQRILNTIKRLASGGRTVVTTIHQPSSRLYYMFDKVVLLSEGCPIYYGPASTALDYFSSVGFSTSVTVNPADLLLDLANGIAPDSKNATEQSEGLEQERKQLRESLISAYERNIATRLKAEVCSLEVNYNITKDACARNSIKPEQWCTSWWHQFKVLLQRGVRERRYEAFNRLRIFQVVSVAFLGGLLWWHTPESHIEDRIALLFFFSVFWGFYPLYNAVFTFPQERRMLIKERSSGMYRLSSYFLARTIGDLPLELALPTAFVIIIYWMGGLKPDPVTFILSLLVVLYSVVVSQSLGLAFGAILMEIKQATTLASVTTLVFLIAGGYYIQQIPPFIVWLKYLSYSYYCYKLLLGVQYNENDYYECSKGELCKVADFPPIKSMGLNHLWVDVCIMAMMLVGYRLVAYLALHRVR 662
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed11g1082 662 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 62 314 IPR003439 GO:0005524
Aed11g1082 662 Pfam ABC transporter 93 242 IPR003439 GO:0005524
Aed11g1082 662 ProSitePatterns ABC transporters family signature. 214 228 IPR017871 GO:0005524
Aed11g1082 662 Coils Coil 333 360 - -
Aed11g1082 662 PANTHER ABC TRANSPORTER, G1, P-LOOP CONTAINING NUCLEOSIDE TRIPHOSPHATE HYDROLASE-RELATED 40 660 - -
Aed11g1082 662 Pfam ABC-2 type transporter 271 346 IPR043926 GO:0140359
Aed11g1082 662 MobiDBLite consensus disorder prediction 1 31 - -
Aed11g1082 662 Gene3D - 81 308 IPR027417 -
Aed11g1082 662 Pfam ABC-2 type transporter 401 606 IPR013525 GO:0016020|GO:0140359
Aed11g1082 662 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 84 307 IPR027417 -
Aed11g1082 662 SMART AAA_5 101 291 IPR003593 -
Aed11g1082 662 CDD ABCG_EPDR 59 296 - -
Aed11g1082 662 PANTHER ABC TRANSPORTER G FAMILY MEMBER 28 40 660 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed11g1082 Aed-Chr11 16471658 16474786 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed11g1082 91 290 Calmodulin-binding Proteins AT2G36910 30.332 2.76e-13 71.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed11g1082 K05681 - gmx:100794774 1241.1
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed11g1082 11 16471658 16474786 Aed11g1082 11 16471658 16474786 ECH