Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed11g1056 ATGGGGTCCAGTGCCAGCAAGGCCACGTCATCATCGTCCTCTTCGGGGAGTTTCAGGAAGGGTCGATCTAAGGGACACCGAGGTTTCCCATCCTATTGTCTGGGAACCTCGTCTGGATCTCGTGACATTGATAGTGACGACCAGGTTTGTGATCAGAATAAAGTAAATGGAGATGATGTGACATACACCAGTGGCAATGAAATAAACTCAGATGAAGTGAAGACAGAATCTTTTAGAAAGGTTAAATCTGATAAATCTGATGAAGTGCCTTCTAACATTGACCTTGAGGAGTGGGGTCACACTGCATCCAGAACTGGTACCAGCTCTGCACATTCTTCTTCAAATCAGAACTTGAACCCTTCAAGTCGGTTCTTTTCTCGCTTTAGCCTTGTTCCCGGTAATATAAGCTTCAGACTTAGCAGAACCACAAGTTTGGGGTCATCTAGGCCTTGCCCGGTTTCTTCAGAGAATCTCTCAATATTTAACAATGAAGATGAGCTTAATCTGCCTTCAGGGCTTCCTGGCAGCTTGATCAATAGAAATGAAACTCAACACCGTAGTGACTTGCTTAATGCATCTTTTGCTAGTCAAGTGCCTATACAGTGTCATGAACAAGCTTCTAATAATTTAAGATCCAATGCACCGGCATTGGTTTCATCTGGAAACTTGGTTAGCAGTCACACACTTTCTTCTGTTCAGGATGTGGTCAGAGATGGAAATGGTACAAGAGAAGTGCCAGATGTGAACTTGTTTTCTCCAAGGATTCATACTGATACAGAAAATATCGAGACTCGACATACTGATAGACGAAATGGAGCTCGAGAGCCTGTTGAACGTAATGTTCGTTTTAGCCGGACATTAAGTGTTGGAAGGCTCCGTGACAGGGTTCTCCGCCGATCAACATTATCGGACTTCACAGTTTGTCCTCTGCAACGAGAGAGAGAAGTGAGAGATGCTAGTCAAGATAATGGAAGACGGGCAGGGGAGAGAGACACAAGAGTGTCACCATCTGGTCGTAATGCTGCAAATTCTTCTACACCTAGATATCCTCTACCCAGTACACCTAGCTCCTTGTTTGGTATCCAAGACTATGAAGTTGAGACTTCACGATCTAGAGAAACTAGGTATCAGGATCTACTGGAGCATAGGTCCAATTTCCTTGAACGGAGAAGAAGAATACGATCCCAGGTCCGAGCTCTTCAGCGGTTGGGTAGCCGGTTTGAAAATCTTTCTGGACATGACAGATCATGTATCTTATCGGGTCAACATAGAAATGGCCGTTGTGCATGCAGACTCAATAACCGTGATACCAATTCTAACGATGATACCAATGCTAGAGCTAGCATATCAAGAATTGTTATGCTAGCTGAAGCCTTATTTGAGGTTCTGGATGAAATTCACCAGCAATCTGTGGTTTTATCTTCTCGCCCTTCTGTGTCATCTATTGGTTCTGTTCCTGCACCCAATGAAGTTGTGGAATCCTTGCCTGTCAAATTATACACTAAGTTGCACAAACATCAAGAAGAACCTGTACAATGTTATATATGCCTTGTGGAGTATGAGGATGGAGACAGCATGCGAGTTCTGCCTTGTCATCATGAATTTCATACAACTTGTGTAGACAAGTGGCTGAAGGAGATTCACAGAACCACTTTAACAAGGTGTGCCCACTATGTCGAGGGGATATCTGTATATCTGATTCATTACCAAGGGAGAACTAAGGTGGCCAATTTGTTAATCAATATCTCCTCTGAGATACTCATGGCTCCTTTGATCATTCATTGCACACAAGCTGATGTGATACCATCAGAAGAAGCACTCTCATTGTTGTCAATGATTATTTACTCCAATTTCTGA 1857 0.433 MGSSASKATSSSSSSGSFRKGRSKGHRGFPSYCLGTSSGSRDIDSDDQVCDQNKVNGDDVTYTSGNEINSDEVKTESFRKVKSDKSDEVPSNIDLEEWGHTASRTGTSSAHSSSNQNLNPSSRFFSRFSLVPGNISFRLSRTTSLGSSRPCPVSSENLSIFNNEDELNLPSGLPGSLINRNETQHRSDLLNASFASQVPIQCHEQASNNLRSNAPALVSSGNLVSSHTLSSVQDVVRDGNGTREVPDVNLFSPRIHTDTENIETRHTDRRNGAREPVERNVRFSRTLSVGRLRDRVLRRSTLSDFTVCPLQREREVRDASQDNGRRAGERDTRVSPSGRNAANSSTPRYPLPSTPSSLFGIQDYEVETSRSRETRYQDLLEHRSNFLERRRRIRSQVRALQRLGSRFENLSGHDRSCILSGQHRNGRCACRLNNRDTNSNDDTNARASISRIVMLAEALFEVLDEIHQQSVVLSSRPSVSSIGSVPAPNEVVESLPVKLYTKLHKHQEEPVQCYICLVEYEDGDSMRVLPCHHEFHTTCVDKWLKEIHRTTLTRCAHYVEGISVYLIHYQGRTKVANLLINISSEILMAPLIIHCTQADVIPSEEALSLLSMIIYSNF 618
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed11g1056 618 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 1 551 - -
Aed11g1056 618 MobiDBLite consensus disorder prediction 314 333 - -
Aed11g1056 618 CDD mRING-H2-C3H2C2D_ZSWM2 512 550 - -
Aed11g1056 618 MobiDBLite consensus disorder prediction 54 71 - -
Aed11g1056 618 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 1 551 - -
Aed11g1056 618 SUPERFAMILY RING/U-box 491 555 - -
Aed11g1056 618 MobiDBLite consensus disorder prediction 101 118 - -
Aed11g1056 618 MobiDBLite consensus disorder prediction 336 358 - -
Aed11g1056 618 MobiDBLite consensus disorder prediction 1 19 - -
Aed11g1056 618 Pfam RING-like zinc finger 512 540 IPR001841 -
Aed11g1056 618 MobiDBLite consensus disorder prediction 72 94 - -
Aed11g1056 618 ProSiteProfiles Zinc finger RING-type profile. 513 555 IPR001841 -
Aed11g1056 618 MobiDBLite consensus disorder prediction 1 118 - -
Aed11g1056 618 MobiDBLite consensus disorder prediction 314 358 - -
Aed11g1056 618 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 476 558 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed11g1056 Aed-Chr11 16280928 16286917 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed11g1056 224 555 C3H Transcription Factor Family AT5G45290 60.767 1.20e-111 343
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed11g1056 - - gmx:100815830 942.184
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed11g1056 11 16280928 16286917 Aed11g1056 11 16280928 16286917 ECH