Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed11g1034 ATGCAAAATTGTTTCTCCAATTGCAGTCTCAAACCCAGCTGCTTTTGTCTTGATGAAAGAGAAAAAGATTTCAACTTTGAAACAGTTGTACAGCCTCTTCGTCTTTCTAAATGGAATGAAAAGAATATAGTAAATTTTTCTATGAGTGGCAGAAAATATACATATCATGAATTTGAGGTGCTTGCAAACAAGGCTTTTTACAGTAGATTTCACAGTTCTAGAGGCCTTCCTTCTTCTTATATGGAAAAGGAATTCTGGAATGAGATGACACATGGAGAGAAGGGAACAGTTGAGTATGGAGTCAATGTTGAAGGTAGTGCCTTTTCATGTGATCCTGGCGACAGGCTTGGAACAAGCAATTGGAATTTGAAGAATTTCTCACGGCTGCTGCAGTCCCCATTACGTTTAGTTGACAGGGATATTCTAGGAATAACTGATCCTATGCTTTACATTGGGATGCTGTTCAGCATGTTTGCATGGCATGTAGAAGACCATTATTTGTACAGCATAAATTATCATCACTCGGGTGCAAATAAAACTTGGTATGGCGTGCCTGGCTATGCAGCATCACAATTTGAAAAGACTGTCTTACAGCATGTGTATTGCAATAAGATCTTAACAAAACATGAAGAAGATAGAGCTTTCAAGTTTCTTGCACAAAAAACAACCATGTTCCCACCAAGTGTCATGTTACAACATGATGTGGCAGTTTACAAGGCTGTACAGAAGCCAGGAGAGTATATCATCACCTTTCCAAGAGCATATCATGCCGGATTTAGTCATGGCTTTAACTGCGGAGAAGCAGTAAACTTTGCTAATGGTGATTGGTTTCCAGTTGGGGCTGCAGCTACCAGTCGTTATGCACATCTCAGAATGATGCCTTTAATTCCATATGAGGAACTTCTTTGTAAAGAGGCAATGTTGGTATACAGGTCCTCAAGAGTAAAAAATTCCAAGAACAAGCCTGAAGACACAGCATCTTATCAAGCTATTAAGCTTCCTTTCTTGCATCTTATGCAATTTTATAAGACATCCAATTTGCAACTGAAGAGTTCAAGAAACTTGTCGAGTTCTTCAAATACATCAGGTTCGCTGCTATGCCGCCTATGCCACAGGGATTGCTATGTAGCATACTTGCTGTGCAAGTACTGCAATTCTCACCCAATTTGTCTTTTTCATGACATTGCACCACAGACTTGTTTGTGTGGGAGAGATTTTACTATTTTCAAAAGGGATGACATTTTCACACTGGAAGAAGCTGCCGGAAGTTTTCAGCAGGGAAAAGAATGTGTTGACACATTCTCTCTATCAAGTATATTCTCCCATAACAGAAATGAATGCATCAAAGATCCTGAGCAGAAAAATCCTTGGCAAAGAGAAAAAAGTGCTAATTATCTGGGGGCAGTATCTAAACTGAAAACAAAAGTAGCTGACAGCATCAAGCACGGTATTGAAGAGAATAAGACAACAATGAAGCATTCGGAAAACAATAGGCTTCCATGTTTGAAGGGCTGCAAAAGGCCAGGAATCATTTATAACTTGAGAAAACGCAAATCAAAAATTGATTTTGTTGCAGCGGTAACTTCTATGGGCAACATCTAA 1602 0.392 MQNCFSNCSLKPSCFCLDEREKDFNFETVVQPLRLSKWNEKNIVNFSMSGRKYTYHEFEVLANKAFYSRFHSSRGLPSSYMEKEFWNEMTHGEKGTVEYGVNVEGSAFSCDPGDRLGTSNWNLKNFSRLLQSPLRLVDRDILGITDPMLYIGMLFSMFAWHVEDHYLYSINYHHSGANKTWYGVPGYAASQFEKTVLQHVYCNKILTKHEEDRAFKFLAQKTTMFPPSVMLQHDVAVYKAVQKPGEYIITFPRAYHAGFSHGFNCGEAVNFANGDWFPVGAAATSRYAHLRMMPLIPYEELLCKEAMLVYRSSRVKNSKNKPEDTASYQAIKLPFLHLMQFYKTSNLQLKSSRNLSSSSNTSGSLLCRLCHRDCYVAYLLCKYCNSHPICLFHDIAPQTCLCGRDFTIFKRDDIFTLEEAAGSFQQGKECVDTFSLSSIFSHNRNECIKDPEQKNPWQREKSANYLGAVSKLKTKVADSIKHGIEENKTTMKHSENNRLPCLKGCKRPGIIYNLRKRKSKIDFVAAVTSMGNI 533
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed11g1034 533 SMART cupin_9 115 288 IPR003347 -
Aed11g1034 533 ProSiteProfiles JmjC domain profile. 115 288 IPR003347 -
Aed11g1034 533 SUPERFAMILY Clavaminate synthase-like 112 304 - -
Aed11g1034 533 Pfam JmjC domain, hydroxylase 148 271 IPR003347 -
Aed11g1034 533 PANTHER LYSINE-SPECIFIC DEMETHYLASE 11 521 - -
Aed11g1034 533 Gene3D Cupin 6 333 - -
Aed11g1034 533 PANTHER TRANSCRIPTION FACTOR JUMONJI FAMILY PROTEIN 11 521 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed11g1034 Aed-Chr11 16153467 16166001 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed11g1034 103 302 C2H2 Transcription Factor Family AT5G04240 44.000 5.65e-51 186
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Aed11g1034 JmjC 1.5e-38 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed11g1034 - - gmx:100809650 810.446