Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed11g1019 ATGAATGTATTCGAACTCGAACAGAGGGGTCCAGTCGAAGTTCACACGTTTGTAGTCCCTCGCACGGAGAGACACGTCATCACACTTGACAATTTGTTTTTCTTTTTTCTTTTCATGATTTCGTCACCACCGTCCTCGTTCGTCTTCGTTCACCTTCTTTTTATTTCCCTCCCTTTGTTCTTCTTTTTTTCTCTATATATATCCCTCTCTCTCACCTTGTCTTCACACTCAGCAATCAGCACCCAAACCCCTCTTTCTAGAACCGTTGGGAAAATGAGTTCGAGGGGAAACCGTAAGAGGAAGATGAATTGGGACTTGAACCGTGATCCACCCACAGAGGAAGACAGCAATAACAGCAATAACAATGTTCGAGGAAGAAACCAGGAGGGTCCCTCAAGGCAACAACAACAACCTCAAGCTCCCATTGTTGATGTCGACGCCATTGACGATGATGTTGTTGAATGTTCACCTAGGTCTTTTGCTCAGTCTAAGAGCATTGCTGATGAGAGGAGGAGAGTTCGCACGAGTCTCACTATTATTCAGTTGGACTCAGAAGATGGGACCAGAGAAGATCCTCAAAACCAAACAACCATCAATGGCAATGCTAATAATGAAAATGCTAAGACACCTGAACCTCCGAAGGAGCCTGAACCTATCAAGGAGCCTGTTTTCAATTGCCCAATATGTATGGCTCCTTTGGTAGAAGAAACATCAACAAGGTGTGGTCATATTTTTTGCAAGAGTTGCATCAGGACTGCTGTATCTACTCAGAGTAAATGCCCTACCTGTAGAAAGAAGGTTACAAGGAACTCACTAATAAGGGTGTTTCTTCCAGCAGCTAGCTAA 846 0.4397 MNVFELEQRGPVEVHTFVVPRTERHVITLDNLFFFFLFMISSPPSSFVFVHLLFISLPLFFFFSLYISLSLTLSSHSAISTQTPLSRTVGKMSSRGNRKRKMNWDLNRDPPTEEDSNNSNNNVRGRNQEGPSRQQQQPQAPIVDVDAIDDDVVECSPRSFAQSKSIADERRRVRTSLTIIQLDSEDGTREDPQNQTTINGNANNENAKTPEPPKEPEPIKEPVFNCPICMAPLVEETSTRCGHIFCKSCIRTAVSTQSKCPTCRKKVTRNSLIRVFLPAAS 281
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed11g1019 281 ProSitePatterns Zinc finger RING-type signature. 241 250 IPR017907 -
Aed11g1019 281 MobiDBLite consensus disorder prediction 181 218 - -
Aed11g1019 281 ProSiteProfiles Zinc finger RING-type profile. 226 264 IPR001841 -
Aed11g1019 281 MobiDBLite consensus disorder prediction 191 208 - -
Aed11g1019 281 Pfam Zinc finger, C3HC4 type (RING finger) 225 263 - -
Aed11g1019 281 MobiDBLite consensus disorder prediction 84 140 - -
Aed11g1019 281 MobiDBLite consensus disorder prediction 98 112 - -
Aed11g1019 281 MobiDBLite consensus disorder prediction 113 140 - -
Aed11g1019 281 PANTHER ELFLESS, ISOFORM B 86 280 - -
Aed11g1019 281 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 177 279 IPR013083 -
Aed11g1019 281 SMART ring_2 226 263 IPR001841 -
Aed11g1019 281 SUPERFAMILY RING/U-box 225 269 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed11g1019 Aed-Chr11 16024289 16029378 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed11g1019 95 278 C3H Transcription Factor Family AT5G48655 41.089 3.30e-35 124
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed11g1019 K22651 - gmx:100778432 216.853