Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed11g1009 ATGAGGATTATGATAAAGGGCGGTGTTTGGAAAAACACCGAAGATGAAATCCTTAAAGCGGCTGTTATGAAGTATGGTAAGAACCAGTGGGCTCGAATCTCTTCACTCCTTGTTCGCAAATCTGCCAAGCAATGCAAAGCTCGCTGGTATGAGTGGCTTGATCCCTCCATAAAAAAGACCGAGTGGACGAGAGAAGAGGATGAGAAGCTACTTCATCTTGCTAAGCTTATGCCCACACAGTGGAGAACAATTGCTCCAATTGTTGGCCGTACCCCTTCTCAGTGTCTTGAGCGGTATGAGAAGCTCCTTGATGCAGCCTGTGTTAAGGATGAGAACTATGAGCCTGGCGATGATCCACGGAAATTGCGTCCTGGGGAGATTGATCCAAACCCTGAGTCTAAACCTGCACGACCAGATCCTGTTGATATGGATGAAGATGAAAAGGAGATGCTTTCTGAAGCACGAGCCCGGTTAGCCAACACAAAGGGTAAGAAAGCAAAAAGGAAAGCTAGGGAGAAACAGCTTGAGGAAGCCAGGAGGCTTGCTTCTTTACAAAAGAAGAGAGAATTGAAGGCTGCCGGAATTAATATTAGGAAGCGGAAGAGAAAAAGGAAAGGAATAGATTACAATGCAGAAATTCCATTTGAAAAAAGGCCTCCTCCAGGGTTTTTTGATGTTACAGATGAAGATAGACCAGTGGAACACCCCCAGTTCCCTACTACAATTGAAGAACTTGAAGGGAAAAGGAGGGTTGATGTTGAGGCACAATTAAGAAAGCAGGACATTGCAAAAAATAAAATTGCACAAAGGCAAGATGCCCCATCTGCAATATTGCATGCCAACAAGCTGAATGACCCAGAAACAGTAAGAAAGAGGTCAAAATTGATGCTCCCACCACCCCAAATTTCAGATCAGGAATTGGATGAAATTGCAAAGTTGGGTTATGCTAGTGACCTTGCAGGAAGTCAGGAACTTGCTGAAGGTAGTGGTGCAACGAGGGCTCTTCTGGCTAATTATGCACAGACACCTGGCCAAGGAATGACTCCTTTGCGAACTCCTCAGAGAACACCGTCTGGTAAAGGTGATGCTATCATGATGGAAGCTGAAAATCTGGCCAGGTTGAGGGAGTCTCAAACACCATTGTTAGGAGGAGAGAACCTGGAGTTGCATCCTTCAGATTTTTCTGGCGTCACTCCTAAGAAAAAGGAGATTCAGACTCCAAATCCAATGCTGACTCCTTCTGCAACTCCTGGAGGGGCAGGTCTCACTCCTAGAATTGGCATGACACCAACAAGAGATGGTTTTTCTTTTAACATGACATCAAAGGGAACTCCTCTTAGGGATGAGCTACATATTAATGAGGACATGAATATGCATGACAGCACTAAGCTTGAGCTACAGAGACAGGCTGATATGAGAAGAAGTTTGTGTTCTGGTTTAGGAAGCCTTCCACAGCCCAAAAATGAGTACCAGATAGTGATGCAACCGGTTCCAGAAGACGCTGAAGAGCCCCCTGAGGAGAAGATTGAAGAGGATATGTCTGATAGAATAGCTAGAGAAAAAGCAGAAGAAGACGCAAGGCTGCAGGCATTGCTTAGAAAGCGATCGAAAGTCCTTCAACGGGAACTTCCTAGGCCTCCTGCAGCATCATTGGAGCTTATAAGAAATTCCTTGATGAGAACTGATGGGGACAAGAGTTCCTTTGTTCCCCCAATCTTTATCGAGCAAGCTGATGAGATGATTAGAAGGGAGCTTCTAACTTTACTGGAGCATGACAATGCTAAGTATTCACTTGATGAGAAAGAGTACAAGGAGAAAAAGAAAGGAGCCAAGCGTGCCGTAAATGGGTCTGCTGTCCCTGTGATTGATGATTTTCCGGAAGACGAAATGAAAGAGGCTGATAATTTGATAAAGGAAGAGGCCCAGTATCTTTGTGCAGCAATGGGACATGAAGATGAACCCCTTGATGAATTTATTGAAGCACACAGAACATGTCTCAATGATCTTATGTACTTTCCTACCCGTAATGCATATGGTCTTTCTAGTGTTGCTGGAAACATGGAAAAGCTTGTAGCTTTGCAGAATGAATTTGAGAATGTGAGAAACAAATTGGATGAGGGTAAGGAGAAGATGGTACGTCTTGAGAAGAAGGTGATGGTTCTCACGCAAGGCTATGAGATGAGAGTAAAGAAAAGTCTCTGGCCACAAATTGAGGTGATTTTCAAGCAGATGGGCGTAGCTGCAACTGAGTTAGAATGCTTTAAAGCTTTGCAAAAGCAGGAGCAATTAGCAGGATCGCATAGGATAAACAATCTATGGGCCGAAGTACAGAAGCAAAAGGAACTTGAGAAAACTTTGCAAAATAGGTATGGGAGTCTAATTGAAGAGCTGGAAAAGATGCAGAATGTCATGGACCAATGCAGCAGATTACAAGCACAACATCGAGAAGAAATTGAAGCAAACAACCATGCTCCTCATGAGGCTGATGAAACTGATGTACGAAGTACAGAAAATGGTGAAGCTGTACCTCACTCTCTAGCAGTTGAGTCATCATCTCATGATGACCAGCAAGTAGATATTGTGCAAGACCAAGCTACTTCTAGACCCAGTCATGACATGGATGTGGATTTTGATAAATTGTCAAATCCTACTACACCAGCTGCAAAGAATGTCGATGAAAAAGTGGAAGGTACCAGTACTGACAATGGGGGGACCATGCCAGAAATGGGTGCTGCAGTGGAAGTGAGTAGCCCCAATCATGCTGTAGTTGCAGATGCTGTAAACTCACGTGATAACAGCATGGGAGAAACCAATGCTGGTTGGGAGGAGACAAATTAG 2838 0.4415 MRIMIKGGVWKNTEDEILKAAVMKYGKNQWARISSLLVRKSAKQCKARWYEWLDPSIKKTEWTREEDEKLLHLAKLMPTQWRTIAPIVGRTPSQCLERYEKLLDAACVKDENYEPGDDPRKLRPGEIDPNPESKPARPDPVDMDEDEKEMLSEARARLANTKGKKAKRKAREKQLEEARRLASLQKKRELKAAGINIRKRKRKRKGIDYNAEIPFEKRPPPGFFDVTDEDRPVEHPQFPTTIEELEGKRRVDVEAQLRKQDIAKNKIAQRQDAPSAILHANKLNDPETVRKRSKLMLPPPQISDQELDEIAKLGYASDLAGSQELAEGSGATRALLANYAQTPGQGMTPLRTPQRTPSGKGDAIMMEAENLARLRESQTPLLGGENLELHPSDFSGVTPKKKEIQTPNPMLTPSATPGGAGLTPRIGMTPTRDGFSFNMTSKGTPLRDELHINEDMNMHDSTKLELQRQADMRRSLCSGLGSLPQPKNEYQIVMQPVPEDAEEPPEEKIEEDMSDRIAREKAEEDARLQALLRKRSKVLQRELPRPPAASLELIRNSLMRTDGDKSSFVPPIFIEQADEMIRRELLTLLEHDNAKYSLDEKEYKEKKKGAKRAVNGSAVPVIDDFPEDEMKEADNLIKEEAQYLCAAMGHEDEPLDEFIEAHRTCLNDLMYFPTRNAYGLSSVAGNMEKLVALQNEFENVRNKLDEGKEKMVRLEKKVMVLTQGYEMRVKKSLWPQIEVIFKQMGVAATELECFKALQKQEQLAGSHRINNLWAEVQKQKELEKTLQNRYGSLIEELEKMQNVMDQCSRLQAQHREEIEANNHAPHEADETDVRSTENGEAVPHSLAVESSSHDDQQVDIVQDQATSRPSHDMDVDFDKLSNPTTPAAKNVDEKVEGTSTDNGGTMPEMGAAVEVSSPNHAVVADAVNSRDNSMGETNAGWEETN 945
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed11g1009 945 CDD SANT_CDC5_II 55 106 - -
Aed11g1009 945 MobiDBLite consensus disorder prediction 399 413 - -
Aed11g1009 945 Coils Coil 783 817 - -
Aed11g1009 945 Gene3D - 5 59 - -
Aed11g1009 945 SUPERFAMILY Homeodomain-like 33 106 IPR009057 -
Aed11g1009 945 MobiDBLite consensus disorder prediction 265 285 - -
Aed11g1009 945 Coils Coil 167 187 - -
Aed11g1009 945 Gene3D - 60 114 - -
Aed11g1009 945 ProSiteProfiles Myb-like domain profile. 2 53 IPR001005 -
Aed11g1009 945 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 2 57 IPR017930 -
Aed11g1009 945 SMART sant 58 105 IPR001005 -
Aed11g1009 945 SMART sant 6 55 IPR001005 -
Aed11g1009 945 MobiDBLite consensus disorder prediction 113 150 - -
Aed11g1009 945 Coils Coil 690 717 - -
Aed11g1009 945 PANTHER - 1 845 - -
Aed11g1009 945 MobiDBLite consensus disorder prediction 820 837 - -
Aed11g1009 945 Pfam Myb-like DNA-binding domain 10 70 - -
Aed11g1009 945 ProSiteProfiles Myb-like domain profile. 54 103 IPR001005 -
Aed11g1009 945 PANTHER CELL DIVISION CYCLE 5-LIKE PROTEIN 1 845 - -
Aed11g1009 945 MobiDBLite consensus disorder prediction 820 842 - -
Aed11g1009 945 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 58 107 IPR017930 -
Aed11g1009 945 MobiDBLite consensus disorder prediction 863 910 - -
Aed11g1009 945 MobiDBLite consensus disorder prediction 383 421 - -
Aed11g1009 945 CDD SANT 10 53 IPR001005 -
Aed11g1009 945 Pfam pre-mRNA splicing factor component 406 655 IPR021786 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed11g1009 Aed-Chr11 15924023 15930650 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed11g1009 1 852 MYB-Related Transcription Factor Family AT1G09770 73.918 0.0 1212
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Aed11g1009 Myb_Cef 9.8e-57 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed11g1009 K12860 - gmx:100790369 1627.84