Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Aed11g1007 | ATGTCTTCTCAAGGTTATGGCGTTCACTTTTTCAAGGTTATTCTTCAAAGCACCCTTCAAAAAGGACAACTGCATACACCACTCGAGGGTGAAGGGTCTAAAAAGAGAAAAATCATCCCCAAAAAAGAAAAAGAAGAAGAAATAGATGATGATGATGAACCTAGGCATTGGATGAAGAAAAGTGCTTTTGATTATTCTAAGCATAATAACGGTGGTGGTAACCAAAGAGGTTTCAAAAGGAGAATCAAAATGTTCCACGAGACAGTGAAGAAAACGTTCCACGCGGAGAATGAACATTTCACATGTTCAATCCAAAAGACATACACTGAGAGAGATCTCTTGATACTACCAATGGAGTTTTCCAAACCATATTTGCACAAGGAAGGAAATGCTGTGCTTTTTGTTGAAGATGGCAAAACATGGGTTGTTGGGATAAAGCTAAATTACTATGGACAGTTGTCATTTAACAGTGGCTGGAGGAAATTTTTGCTGGAGAATAAATTGAAATGGGGTGATGTTTGTGGTTTTGAGCTACACAATAGTCAAGATTTTTCATTCAAAGTTACTATTTTTCCTTTCTCAGAGGACCACTCTTGCACTCCCCTCTTCAAAGGTCAACAAGGACTTTCTGATATGCCTTCGTCATCCTTTAAAACTCCAATGACCTCTAAATCTAGCACATCAAAGCCGAAGGATGAACTTTGTATCTTCATCAAGACTTCACAGTTACCGACAATACCATTTAAATACATAAGGGGGTACGTTAAGAAGAGTTGCAGTGAAATCCATGGAAGACACGTGACCCTTCATGTTGGGCATAGATCGTGGCAGGTGAAACTGCTCTGTTATGAAGCAAATTCCTTTGCCAGATTGTCTAGTGGGTGGCCAGAATTTGCGAGGGAGTGTGATTTGAAACCGGGTGATGTTTGTATCCTTAGGATGATACATATGGAAAATCTTGAGTTCAGAGTTTCATGTTTAAAAGGAAAAAACTTTTAA | 999 | 0.3884 | MSSQGYGVHFFKVILQSTLQKGQLHTPLEGEGSKKRKIIPKKEKEEEIDDDDEPRHWMKKSAFDYSKHNNGGGNQRGFKRRIKMFHETVKKTFHAENEHFTCSIQKTYTERDLLILPMEFSKPYLHKEGNAVLFVEDGKTWVVGIKLNYYGQLSFNSGWRKFLLENKLKWGDVCGFELHNSQDFSFKVTIFPFSEDHSCTPLFKGQQGLSDMPSSSFKTPMTSKSSTSKPKDELCIFIKTSQLPTIPFKYIRGYVKKSCSEIHGRHVTLHVGHRSWQVKLLCYEANSFARLSSGWPEFARECDLKPGDVCILRMIHMENLEFRVSCLKGKNF | 332 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Aed11g1007 | 332 | PANTHER | TRANSCRIPTION FACTOR B3-DOMAIN FAMILY-RELATED | 238 | 326 | - | - | |
| Aed11g1007 | 332 | PANTHER | B3 DOMAIN-CONTAINING | 238 | 326 | - | - | |
| Aed11g1007 | 332 | ProSiteProfiles | B3 DNA-binding domain profile. | 274 | 330 | IPR003340 | GO:0003677 | |
| Aed11g1007 | 332 | SUPERFAMILY | DNA-binding pseudobarrel domain | 245 | 327 | IPR015300 | - | |
| Aed11g1007 | 332 | SUPERFAMILY | DNA-binding pseudobarrel domain | 94 | 192 | IPR015300 | - | |
| Aed11g1007 | 332 | ProSiteProfiles | B3 DNA-binding domain profile. | 99 | 194 | IPR003340 | GO:0003677 | |
| Aed11g1007 | 332 | Gene3D | - | 81 | 195 | IPR015300 | - | |
| Aed11g1007 | 332 | Gene3D | - | 210 | 331 | IPR015300 | - | |
| Aed11g1007 | 332 | MobiDBLite | consensus disorder prediction | 22 | 53 | - | - | |
| Aed11g1007 | 332 | SMART | B3_2 | 104 | 194 | IPR003340 | GO:0003677 | |
| Aed11g1007 | 332 | SMART | B3_2 | 237 | 330 | IPR003340 | GO:0003677 | |
| Aed11g1007 | 332 | PANTHER | TRANSCRIPTION FACTOR B3-DOMAIN FAMILY-RELATED | 41 | 191 | - | - | |
| Aed11g1007 | 332 | PANTHER | B3 DOMAIN-CONTAINING | 41 | 191 | - | - | |
| Aed11g1007 | 332 | CDD | B3_DNA | 245 | 328 | IPR003340 | GO:0003677 | |
| Aed11g1007 | 332 | Pfam | B3 DNA binding domain | 102 | 191 | IPR003340 | GO:0003677 | |
| Aed11g1007 | 332 | Pfam | B3 DNA binding domain | 246 | 326 | IPR003340 | GO:0003677 | |
| Aed11g1007 | 332 | CDD | B3_DNA | 103 | 192 | IPR003340 | GO:0003677 | |
| Aed11g1007 | 332 | MobiDBLite | consensus disorder prediction | 28 | 53 | - | - |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Aed11g1007 | 2 | 191 | B3 DNA Binding Superfamily | AT3G18990 | 29.442 | 1.48e-11 | 62.8 |
Transcription factors information
| Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
|---|---|---|---|---|---|---|---|
| TF | B3 | Aed11g1007 | B3 | 5.2e-08 | CL0405 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Aed11g1007 | - | - | vra:106753565 | 307.76 |