Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed11g1006 ATGAATTCTCTCTTCTCGCTGGAAAACCTTCCCCCACCGCCGGGAATTCCAATCCCCGCCACAGTAGCTGCCCCAGCCCCAATTCTAATCCCAAAGCTGGAACCTTTCGACGAATGGCTCAACACCCACACACCCCAACAACAACAACAATCTCACGATCCCAATATTTCAAACGGGTCCCTCGGCCTCGACCTCAACCTCTTCTGCGAAAATAACCCAGACGCTGTCTCCGGCGACCCAATATTGGTCTCTGAATTCCACCAACTCTCTCAGCTTTTCCAATCCGCTTTCACCACCGCAGCCAACAACAACAACCACCCCCAAAACGATGTCGTTCCCGACCTCATCACCAAAGGCCTACAGCAGCTCCGAAACGACGCCTTTCCCACCGCTCCGTTGCAGAGCGCCGTTTCGGACCACCCCGGGATGCAGCAGTGCCAGAACGGCACAGCCGTTCCGGACCTGGATTCACGGGCAATTGTGCCGGTCCCGGAGGAGGAGAGCTCCCCCTCGGTGGCAGTCGCGGCCAACACTCCGCGGCGGCGGTTCAAGGAGCTGGTCCGCGTGTCGGATCTCGGCGGGTCGGAGCATCTTCACCTCCGGGACGTAGTCCGGCGGACGCGGATGGTGTACGACTCCCTCCGCATCCTGGCGACGGTGGAGGACGAGCGGCGGGCGTCGGACACTCGCCGCGGCCGCAGCGATTTGCGCGCCTCGGCGGTGATGAGGAACTGCGGCCTGTGGCTGAACCGTGACAAGAGAATTGTTGGTGCAATTCCCGGTGTGTGCATTGGTGATGTGTTCCTTTACAGAATGGAGTTGTGTGTGGTTGGCCTTCATGGGCAGCCTCAGGCAGGGATTGATTATCTCCCTGCTAGCATGAGTTCCAATGGTGAACCAATTGCTACTAGTGTCATTGTCTCTGGTGGCTATGAGGATGATGTGGATGAGGGTGATGTCATCACTTACTCTGGCCATGGTGGTCAGGACAAGCATTCTAGACAGGTTTTCCACCAGAAGCTCGAGGGAGGGAACCTCGCAATGGAGAGGAGCATGCACTATGGGATCGAGGTGAGGGTCATGCGCGGGGTGCGCTATGAGGGCGCTGCCTCCGCTACTGGCAAGTTGTATGTGTATGATGGCCTGTTTAGGATTAATGAGTGCTGGTTTGATGTGGGGAAGTCCGGTTTTGGGGTTTATAAGTTTAAGCTCTGTAGGATTGAGGGGCAGCCTAAGATGGGGACTGTGGTGATGAAGGAGGCACTTATGCTTAGGAAGGATCCCTTGAGTTTCAAACCCATGTGTTGTTTGTCGCTTGATATTTCGAATAGGAATGAGAATGTGCCTGTCCGGCTTTTTAATGACATTGATCGTAACTATGACCCTATGCAGTATGAGTATCTTGGGAAGACGAATTTTCCGCAGTTTGTGTTTCATCAGACTGGTACGGGGACGGGTTGTGAGTGTGTGGATGGGTGTGTTGAGGGGTGCTTTTGTGCTATGAAGAATGGGGGGGAGTTACCTTATAATCAGAGCGGGATTCTCTTGAGAGGGAAGCCTTTGGTTTTCGAGTGTGGTCCCTTTTGCCGTTGTCCTCCTCATTGTCGGAACCGTGTCGCGCAGAAGGGGTTGAAAAATAGGTTGGAAGTATTTAGATCTAGGGAAACTGGTTGGGGAGTTAGGTCCTTGGACCTTATTCAAGCTGGTGCTTTTATATGCGAGTACACAGGGGTTGTTCTGACTAGGGAGCAAGCACAGCTTTTGACAATGAATGGTGATTCGTTGATATATCCAAATCGGTTTGCTGATAGATGGGCAGAGTGGGGGGATTTATCTATGATGGACTCCAGTTATGTGCGCCCATCGTATCCGTCAATACCGCCTTTGGATTTTGCTATGGATGTGTCAAGATCGAGGAATGTTGCTTGCTATATGAGTCATAGTACGACTCCTAATGTGTTGGTTCAGTTTCTTCTGTATGATCACAATAATTTGATGTTCCCTCGCCTTATGCTATTTGCAATGGAGAGCATCCCTCCGATGAGAGAGCTCAGCCTTGATTACGGGGTAGCTGATGAGTGGACAGGAAAGTTCTCTATATGTAACTGA 2109 0.5235 MNSLFSLENLPPPPGIPIPATVAAPAPILIPKLEPFDEWLNTHTPQQQQQSHDPNISNGSLGLDLNLFCENNPDAVSGDPILVSEFHQLSQLFQSAFTTAANNNNHPQNDVVPDLITKGLQQLRNDAFPTAPLQSAVSDHPGMQQCQNGTAVPDLDSRAIVPVPEEESSPSVAVAANTPRRRFKELVRVSDLGGSEHLHLRDVVRRTRMVYDSLRILATVEDERRASDTRRGRSDLRASAVMRNCGLWLNRDKRIVGAIPGVCIGDVFLYRMELCVVGLHGQPQAGIDYLPASMSSNGEPIATSVIVSGGYEDDVDEGDVITYSGHGGQDKHSRQVFHQKLEGGNLAMERSMHYGIEVRVMRGVRYEGAASATGKLYVYDGLFRINECWFDVGKSGFGVYKFKLCRIEGQPKMGTVVMKEALMLRKDPLSFKPMCCLSLDISNRNENVPVRLFNDIDRNYDPMQYEYLGKTNFPQFVFHQTGTGTGCECVDGCVEGCFCAMKNGGELPYNQSGILLRGKPLVFECGPFCRCPPHCRNRVAQKGLKNRLEVFRSRETGWGVRSLDLIQAGAFICEYTGVVLTREQAQLLTMNGDSLIYPNRFADRWAEWGDLSMMDSSYVRPSYPSIPPLDFAMDVSRSRNVACYMSHSTTPNVLVQFLLYDHNNLMFPRLMLFAMESIPPMRELSLDYGVADEWTGKFSICN 702
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed11g1006 702 SMART G9a_1 252 410 IPR003105 -
Aed11g1006 702 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE FAMILY MEMBER SUVH2-RELATED 96 698 - -
Aed11g1006 702 Gene3D - 254 414 IPR036987 -
Aed11g1006 702 SUPERFAMILY SET domain 430 701 IPR046341 -
Aed11g1006 702 Pfam Pre-SET motif 441 538 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Aed11g1006 702 ProSiteProfiles Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile. 103 702 IPR025794 GO:0016571
Aed11g1006 702 ProSiteProfiles YDG domain profile. 257 406 IPR003105 -
Aed11g1006 702 Gene3D SET domain 415 702 IPR046341 -
Aed11g1006 702 Pfam SET domain 557 689 IPR001214 GO:0005515
Aed11g1006 702 Pfam SAD/SRA domain 256 410 IPR003105 -
Aed11g1006 702 ProSiteProfiles Pre-SET domain profile. 485 543 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Aed11g1006 702 SUPERFAMILY PUA domain-like 238 420 IPR015947 -
Aed11g1006 702 ProSiteProfiles SET domain profile. 546 689 IPR001214 GO:0005515
Aed11g1006 702 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SETMAR 96 698 - -
Aed11g1006 702 SMART preset_2 438 530 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Aed11g1006 702 SMART set_7 546 695 IPR001214 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed11g1006 Aed-Chr11 15897101 15899209 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed11g1006 203 691 Su(var)3-9 homologs AT1G73100 38.878 2.80e-102 325
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Aed11g1006 SAD_SRA 4.6e-46 CL0178
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed11g1006 K11420 - gmx:100795514 1135.55