Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Aed11g1003 | ATGGGGAGGATCAAACCTCAAGCTCTGCTACAGCAAAGCAAAAGGAAGAAGGGGCCTTCTCGCATAAGTTCCACCACTGTTATATTCTATACGTTGATTCTTGCCATGCTTGTGACACGACTTCAAGCAAAGAGCTACATATCAGTCTCTGAGGATGAAAATACATCTGTGGAATCCAAAAAATCTGATCTGCCTGGATATGCTGTTGTAATTACTTCTAAAGGTTCTATCATAGTAGAACTTTACAAGGAAAGTGCTCCTGAAGTTGTTGATGAATTCATAGATTTATGTCAAAAAGGGCACTTCAAGGGGATGCTTTTTCACCAAGTAATTAAGCACTATGTGATTCAGGCAGGTCATAACAAAGGGCCTGGAGCTGCTGAAGATTGGAACCTGTTAGGAAAGAAATATGCAAGTATGAGACATGAAGCATTCATGCTTGGAACATTGAAGGGAAAATACTTTAACAAAGGATTTGATCTTTTCATCACAACTGCACCAATACCAGATCTAAGTGAAAAGCTTATTGTGTTTGGCCGAGTCATCAAAGGAGAGGATATTGTTCAGGTGGCTGAATTTTCTTTATTCCCATTACTCTTACTGGTTAAGAAGGAAATTGAAGAAGTGGATACAGATGAACATTACCAACCAAAAATTTCTATTGGGATACTTGATGTGGCTCTTGAACAGATGGTGTGA | 699 | 0.3906 | MGRIKPQALLQQSKRKKGPSRISSTTVIFYTLILAMLVTRLQAKSYISVSEDENTSVESKKSDLPGYAVVITSKGSIIVELYKESAPEVVDEFIDLCQKGHFKGMLFHQVIKHYVIQAGHNKGPGAAEDWNLLGKKYASMRHEAFMLGTLKGKYFNKGFDLFITTAPIPDLSEKLIVFGRVIKGEDIVQVAEFSLFPLLLLVKKEIEEVDTDEHYQPKISIGILDVALEQMV | 232 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Aed11g1003 | 232 | PANTHER | PEPTIDYL-PROLYL CIS-TRANS ISOMERASE CYP21-4 | 1 | 192 | - | - | |
| Aed11g1003 | 232 | PANTHER | PEPTIDYL-PROLYL CIS-TRANS ISOMERASE CYP21-4 | 203 | 232 | - | - | |
| Aed11g1003 | 232 | CDD | cyclophilin | 72 | 225 | - | - | |
| Aed11g1003 | 232 | PANTHER | PEPTIDYL-PROLYL CIS-TRANS ISOMERASE | 1 | 192 | - | - | |
| Aed11g1003 | 232 | SUPERFAMILY | Cyclophilin-like | 65 | 227 | IPR029000 | - | |
| Aed11g1003 | 232 | PRINTS | Cyclophilin peptidyl-prolyl cis-trans isomerase signature | 173 | 188 | IPR002130 | GO:0000413|GO:0003755 | |
| Aed11g1003 | 232 | PRINTS | Cyclophilin peptidyl-prolyl cis-trans isomerase signature | 81 | 96 | IPR002130 | GO:0000413|GO:0003755 | |
| Aed11g1003 | 232 | PRINTS | Cyclophilin peptidyl-prolyl cis-trans isomerase signature | 160 | 172 | IPR002130 | GO:0000413|GO:0003755 | |
| Aed11g1003 | 232 | PRINTS | Cyclophilin peptidyl-prolyl cis-trans isomerase signature | 107 | 119 | IPR002130 | GO:0000413|GO:0003755 | |
| Aed11g1003 | 232 | Gene3D | - | 51 | 231 | IPR029000 | - | |
| Aed11g1003 | 232 | ProSiteProfiles | Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. | 75 | 228 | IPR002130 | GO:0000413|GO:0003755 | |
| Aed11g1003 | 232 | Pfam | Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD | 70 | 189 | IPR002130 | GO:0000413|GO:0003755 | |
| Aed11g1003 | 232 | PANTHER | PEPTIDYL-PROLYL CIS-TRANS ISOMERASE | 203 | 232 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Aed11g1003 | Aed-Chr11 | 15870899 | 15873776 | Dispersed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Aed11g1003 | 66 | 228 | U-box Gene Family | AT5G67530 | 25.882 | 3.19e-11 | 60.8 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Aed11g1003 | - | - | gmx:100796043 | 385.571 |